Basic Information
Locus ID:
gene_8641
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
protein polyubiquitination
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_18_Chr_7N | 1355051 | 1355746 | + | gene_8641 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.90 | 16,164.46 Da | 42.08 | 84.53 | 0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17123 | RING-like zinc finger | 94 | 121 | 3.4E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 93 | 148 | 8.08E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 82 | 146 | 4.4E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 94 | 141 | 3.3E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 94 | 142 | 11.987676 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01150.1 | RING-H2 finger protein 2B. Encodes a RING-H2 finger protein that is expressed in vascular tissue, root tips, embryos and pistils. | 0 |
| RefSeq | XP_019416669.1 | PREDICTED: probable E3 ubiquitin-protein ligase RHA1A [Lupinus angustifolius] | 0 |
| Q7T0Q3 | E3 ubiquitin-protein ligase RNF126-A OS=Xenopus laevis OX=8355 GN=rnf126-a PE=2 SV=1 | 0 | |
| TrEMBL | A0A7J9KAY1 | RING-type domain-containing protein OS=Gossypium armourianum OX=34283 GN=Goarm_000611 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg31585, jg31586, jg3939, jg3941 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_8641, gene_8919 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah014179, Ah014180 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25440, Sbi_jg9286 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19310 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011098 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl41853, Sgl41854, Sgl46654, Sgl46655 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009459, gene:ENSEOMG00000032499 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30179710, pistato.v30266860 |
| Apiaceae | Apium graveolens | 2 | Ag3G02724, AgUnG01316 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G005650 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103703667, gene-LOC120110833 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.812.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri15G25309, Ftri4G01674, Ftri8G15360 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G15580.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022864m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g28870.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g012090.2N, BniB03g062510.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2492 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2629 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g06690, gene.Cymno06g07990 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0163s00012.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g09180 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.118 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00000999 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G31999 |
| Poaceae | Echinochloa crus-galli | 6 | AH06.538, AH07.3799, BH06.584, BH07.3621, CH06.597 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0149180, gene-QOZ80_2BG0205090 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.6HG0624910.1, HORVU.MOREX.r3.6HG0625080.1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_026256, gene-QYE76_028259 |
| Poaceae | Oryza coarctata | 3 | Oco04G024840, Oco11G003690, Oco12G003690 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g55480.1, LOC_Os06g08250.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G307400, gene-BS78_10G063800 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0206249, Pt_Chr0207122, Pt_Chr0405272, Pt_Chr0602175 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr11G021590, Chr11G021600 |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G643200, Tel7E01G295400 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC6AG054130, gene_TRIDC6BG063140 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS6A02G361600.2, TraesCS6B02G395000.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb257950_P001, Zm00001eb374880_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-39912, nbis-gene-5026 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g17338, Zma_g29221 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG04.1106 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g12160 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.1, evm.TU.Scaffold_4_RagTag.2229 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13904, nbisL1-mrna-25244 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-21293, nbisL1-mrna-4321 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16548, nbisL1-mrna-4981 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.1309, evm.TU.utg000033l.75 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000927, Maker00015064 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16699, nbisL1-mrna-1874 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-14508, nbisL1-mrna-22265 |
| Salicaceae | Populus euphratica | 2 | populus_peu05656, populus_peu12287 |
| Solanaceae | Lycium barbarum | 5 | gene-LOC132602104, gene-LOC132603071, gene-LOC132603072 ... |
| Solanaceae | Solanum chilense | 2 | SOLCI004796600, SOLCI004796700 |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107021805, gene-LOC107024256, gene-LOC107024276 ... |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.12336_chr02_-, gene_8146 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1084 |