Basic Information
Locus ID:
gene_8519
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
LRR receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 69151531 | 69161900 | - | gene_8519 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.60 | 92,075.25 Da | 38.27 | 103.16 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 694 | 745 | 2.8E-8 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 30 | 72 | 4.8E-8 | IPR013210 |
| Pfam | PF13516 | Leucine Rich repeat | 207 | 222 | 0.67 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 542 | 563 | 0.48 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 281 | 339 | 2.4E-9 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 101 | 437 | 5.67E-61 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 350 | 762 | 6.46E-49 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 25 | 173 | 7.8E-31 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 346 | 519 | 1.5E-46 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 248 | 345 | 1.3E-26 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 174 | 247 | 2.6E-17 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 520 | 784 | 7.5E-68 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 302 | 326 | 12.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 564 | 588 | 34.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 254 | 278 | 350.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 708 | 731 | 98.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 470 | 493 | 410.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 104 | 131 | 420.0 | - |
| SMART | SM00369 | LRR_typ_2 | 540 | 562 | 80.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 732 | 755 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 129 | 153 | 9.8 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 540 | 569 | 230.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 153 | 176 | 160.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 206 | 229 | 44.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 278 | 304 | 42.0 | - |
| SMART | SM00369 | LRR_typ_2 | 684 | 707 | 380.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 104 | 128 | 170.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 182 | 206 | 70.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 708 | 734 | 180.0 | - |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 734 | 756 | 7.33462 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 542 | 564 | 7.273015 | IPR001611 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 732 | 745 | 9.6E-6 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 711 | 724 | 9.6E-6 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04220.1 | receptor like protein 46. | 0 |
| RefSeq | XP_021741316.1 | leucine-rich repeat receptor protein kinase MSP1-like [Chenopodium quinoa] | 0 |
| F4JGB6 | Receptor-like protein 46 OS=Arabidopsis thaliana OX=3702 GN=RLP46 PE=3 SV=1 | 0 | |
| TrEMBL | A0A1R3JVN5 | LRRNT_2 domain-containing protein OS=Corchorus olitorius OX=93759 GN=COLO4_13599 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18890 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021381 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g056200 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000032386 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.3BG0017740 |
| Anacardiaceae | Pistacia vera | 6 | pistato.v30085600, pistato.v30085610, pistato.v30085720 ... |
| Apiaceae | Apium graveolens | 5 | Ag1G01409, Ag1G01533, Ag1G01534, Ag3G00393, Ag9G01364 |
| Arecaceae | Cocos nucifera | 1 | scaffold001583G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103718375 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G03062, Ftri16G18592 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G04220.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10027707m.g.v1.0, Thhalv10027711m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g02900.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB04g018820.2N, BniB04g018840.2N, BniB07g033940.2N |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.2115, evm.TU.LG15.1016 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.19 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10341 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20621 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17663 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000018l.391 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002965 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-24363 |
| Salicaceae | Populus euphratica | 1 | populus_peu04482 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132607114 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8519 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1643 |