Basic Information
Locus ID:
gene_8414
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Hippocampus abundant transcript 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_18_Chr_7N | 2771746 | 2788338 | - | gene_8414 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.41 | 104,715.47 Da | 40.43 | 98.95 | 0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17330 | MFS_SLC46_TetA_like | 15 | 429 | 5.87891E-68 | - |
| Pfam | PF00069 | Protein kinase domain | 708 | 818 | 5.6E-26 | IPR000719 |
| Pfam | PF07690 | Major Facilitator Superfamily | 15 | 389 | 9.3E-27 | IPR011701 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 700 | 910 | 2.29E-43 | IPR011009 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 15 | 425 | 1.05E-37 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 12 | 426 | 8.3E-39 | IPR036259 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 690 | 889 | 4.7E-50 | - |
| SMART | SM00220 | serkin_6 | 621 | 843 | 4.0E-6 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 524 | 861 | 20.35792 | IPR000719 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 11 | 435 | 9.293217 | IPR020846 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 732 | 744 | - | IPR008271 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42210.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_031265441.1 | uncharacterized protein LOC116123848 isoform X1 [Pistacia vera] | 0 |
| O23082 | Cysteine-rich receptor-like protein kinase 44 OS=Arabidopsis thaliana OX=3702 GN=CRK44 PE=3 SV=2 | 0 | |
| TrEMBL | A0A7C9CPM9 | MFS domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology