Basic Information
Locus ID:
gene_8413
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Cysteine-rich receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_18_Chr_7N | 2767391 | 2772519 | - | gene_8413 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.55 | 76,243.45 Da | 42.46 | 93.44 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 360 | 625 | 2.50731E-86 | - |
| Pfam | PF00069 | Protein kinase domain | 355 | 619 | 1.6E-48 | IPR000719 |
| Pfam | PF01657 | Salt stress response/antifungal | 28 | 117 | 1.3E-7 | IPR002902 |
| Pfam | PF01657 | Salt stress response/antifungal | 144 | 254 | 9.0E-11 | IPR002902 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 337 | 659 | 2.16E-80 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 431 | 631 | 7.5E-58 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 317 | 429 | 1.9E-36 | - |
| Gene3D | G3DSA:3.30.430.20 | - | 21 | 123 | 5.1E-9 | IPR038408 |
| Gene3D | G3DSA:3.30.430.20 | - | 133 | 256 | 3.8E-17 | IPR038408 |
| SMART | SM00220 | serkin_6 | 354 | 622 | 2.1E-30 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 151 | 256 | 14.669378 | IPR002902 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 22 | 123 | 13.764168 | IPR002902 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 354 | 631 | 36.258671 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 360 | 382 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 475 | 487 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11460.3 | - | 0 |
| RefSeq | XP_021756548.1 | cysteine-rich receptor-like protein kinase 27 isoform X1 [Chenopodium quinoa] | 0 |
| Q9M0X5 | Cysteine-rich receptor-like protein kinase 25 OS=Arabidopsis thaliana OX=3702 GN=CRK25 PE=3 SV=1 | 0 | |
| TrEMBL | A0A803LIS2 | Cysteine-rich receptor-like protein kinase 25 OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_8411, gene_8412, gene_8413 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39968, Sbi_jg55298 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg14367, Seu_jg14368 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000035541, gene:ENSEOMG00000049013 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0022010, CQ.Regalona.r1.1AG0022030 |