Basic Information
Locus ID:
gene_8394
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
U11 U12 small nuclear ribonucleoprotein 25 kDa
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_18_Chr_7N | 2362873 | 2372444 | - | gene_8394 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.75 | 34,341.32 Da | 48.12 | 80.50 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17058 | Ubl_SNRNP25 | 59 | 145 | 1.66383E-37 | IPR040610 |
| Pfam | PF18036 | Ubiquitin-like domain | 60 | 145 | 1.0E-29 | IPR040610 |
| Pfam | PF01020 | Ribosomal L40e family | 246 | 294 | 1.2E-25 | IPR001975 |
| Pfam | PF00240 | Ubiquitin family | 165 | 233 | 4.1E-20 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 118 | 236 | 9.01E-21 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 55 | 146 | 4.73E-20 | IPR029071 |
| SUPERFAMILY | SSF57829 | Zn-binding ribosomal proteins | 245 | 294 | 1.25E-14 | IPR011332 |
| Gene3D | G3DSA:3.10.20.90 | - | 160 | 242 | 5.6E-26 | - |
| Gene3D | G3DSA:4.10.1060.50 | - | 246 | 295 | 1.5E-25 | IPR038587 |
| Gene3D | G3DSA:3.10.20.90 | - | 54 | 156 | 2.3E-36 | - |
| SMART | SM01377 | Ribosomal_L40e_3 | 245 | 296 | 4.1E-26 | IPR001975 |
| SMART | SM00213 | ubq_7 | 159 | 232 | 3.3E-14 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 163 | 236 | 16.581177 | IPR000626 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07860.1 | Ubiquitin-like superfamily protein. | 0 |
| RefSeq | XP_021737114.1 | U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Chenopodium quinoa] | 0 |
| Q84WS8 | U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP25 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C8ZPL0 | Ubiquitin_4 domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg17173 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8394 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah036054 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39955, Sbi_jg55286 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14378 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014140 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl12103, Sgl12119, Sgl17397 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000017349, gene:ENSEOMG00000049485 |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.1AG0022170, CQ.Regalona.r1.1BG0002180 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30048830 |
| Apiaceae | Apium graveolens | 1 | Ag2G00012 |
| Arecaceae | Cocos nucifera | 1 | COCNU_10G001760 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103714628 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.2119.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G20326 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G07860.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10021648m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g06780.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g042910.2N, BniB03g023780.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0519 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0476 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g09400 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g06710 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5305 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG06.143, evm.TU.LG12.462 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00020600 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G17489, Lb8G35827 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2617, BH09.2839, CH09.3038 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0300570, gene-QOZ80_4BG0331240 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0201100.1 |
| Poaceae | Oryza coarctata | 2 | Oco07G018390, Oco08G017720 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g56770.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G271300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0300426, Pt_Chr0300454 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G001700, Chr25G001310, Chr26G017610, Chr30G001330 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G834600 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC2AG041410, gene_TRIDC2AG062640 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS2A02G285800.1, TraesCS2A02G435600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb067320_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-23117 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20625 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.554, evm.TU.LG12.1170 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g09220 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.1416 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9235 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17618 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15246 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003751 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9515 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18785 |
| Salicaceae | Populus euphratica | 1 | populus_peu33067 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132614136 |
| Solanaceae | Solanum chilense | 1 | SOLCI005363100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107003177 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1857 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2505 |
| Zosteraceae | Zostera marina | 1 | Zosma05g31090.v3.1 |