Basic Information
Locus ID:
gene_8355
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_18_Chr_7N | 1521170 | 1528816 | - | gene_8355 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.29 | 67,291.88 Da | 53.19 | 77.19 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07734 | F-box associated | 254 | 389 | 7.5E-6 | IPR006527 |
| Pfam | PF13456 | Reverse transcriptase-like | 458 | 535 | 6.0E-6 | IPR002156 |
| Pfam | PF00646 | F-box domain | 10 | 47 | 2.7E-9 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 11 | 70 | 9.81E-14 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 9 | 46 | 5.5E-9 | - |
| Gene3D | G3DSA:3.30.420.10 | - | 452 | 565 | 4.0E-5 | IPR036397 |
| SMART | SM00256 | fbox_2 | 11 | 51 | 5.7E-10 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 119 | 385 | 9.4E-21 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 5 | 52 | 11.48455 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 421 | 444 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 422 | 438 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06240.1 | F-box family protein. | 0 |
| RefSeq | XP_028054581.1 | F-box protein At3g07870-like [Camellia sinensis] | 0 |
| Q8GXC7 | F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana OX=3702 GN=At3g06240 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9AYU5 | F-box domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 15 | gene_12873, gene_12874, gene_18285, gene_18342, gene_18344 ... |