Basic Information
Locus ID:
gene_8353
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_18_Chr_7N | 1499655 | 1505537 | - | gene_8353 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.80 | 66,420.12 Da | 52.91 | 77.55 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13456 | Reverse transcriptase-like | 457 | 534 | 5.9E-6 | IPR002156 |
| Pfam | PF00646 | F-box domain | 10 | 47 | 6.8E-9 | IPR001810 |
| Pfam | PF07734 | F-box associated | 253 | 387 | 2.3E-5 | IPR006527 |
| SUPERFAMILY | SSF81383 | F-box domain | 11 | 66 | 2.75E-13 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 9 | 46 | 5.3E-9 | - |
| Gene3D | G3DSA:3.30.420.10 | - | 451 | 556 | 4.2E-5 | IPR036397 |
| SMART | SM00256 | fbox_2 | 11 | 51 | 1.2E-9 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 119 | 383 | 4.0E-20 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 5 | 52 | 11.564033 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 420 | 443 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 421 | 437 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06240.1 | F-box family protein. | 0 |
| RefSeq | XP_049388257.1 | F-box/kelch-repeat protein At3g23880-like isoform X1 [Solanum stenotomum] | 0 |
| Q8GXC7 | F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana OX=3702 GN=At3g06240 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9AYU5 | F-box domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 15 | gene_12873, gene_12874, gene_18285, gene_18342, gene_18344 ... |