Basic Information
Locus ID:
gene_8163
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 22462774 | 22488551 | - | gene_8163 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.64 | 78,053.28 Da | 53.97 | 83.33 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 227 | 360 | 4.28233E-62 | - |
| CDD | cd17920 | DEXHc_RecQ | 26 | 226 | 1.19317E-106 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 41 | 205 | 8.4E-19 | IPR011545 |
| Pfam | PF16124 | RecQ zinc-binding | 363 | 434 | 2.1E-11 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 258 | 349 | 1.0E-13 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 76 | 371 | 1.82E-52 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 8 | 226 | 1.0E-88 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 227 | 452 | 4.4E-64 | IPR027417 |
| SMART | SM00490 | helicmild6 | 270 | 351 | 3.6E-22 | IPR001650 |
| SMART | SM00487 | ultradead3 | 33 | 235 | 2.6E-31 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 26 | 437 | 1.3E-144 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 250 | 390 | 17.136509 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 45 | 219 | 24.599146 | IPR014001 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 531 | 552 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 471 | 498 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 631 | 700 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 670 | 685 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35740.1 | DEAD/DEAH box RNA helicase family protein . Encodes RECQ3, an ATP-dependent helicase. | 0 |
| RefSeq | XP_034699819.1 | ATP-dependent DNA helicase Q-like 3 isoform X1 [Vitis riparia] | 0 |
| Q9FT72 | ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana OX=3702 GN=RECQL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9EJK4 | ATP-dependent DNA helicase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology