Basic Information
Locus ID:
gene_8139
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 21038107 | 21064320 | - | gene_8139 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.40 | 198,197.02 Da | 42.22 | 89.40 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 243 | 363 | 1.82543E-4 | - |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 783 | 1092 | 1.1E-10 | IPR009543 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 226 | 348 | 7.24E-5 | IPR035892 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 218 | 367 | 9.02976 | IPR000008 |
| Coils | Coil | Coil | 147 | 167 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.1 | calcium-dependent lipid-binding family protein. | 0 |
| RefSeq | XP_010679514.1 | uncharacterized protein LOC104894866 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| A1Z713 | Intermembrane lipid transfer protein Vps13 OS=Drosophila melanogaster OX=7227 GN=Vps13 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5B6YQW0 | C2 domain-containing protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_003542 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology