Basic Information
Locus ID:
gene_8127
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Leucine Rich Repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_12_Chr_6 | 35274703 | 35277830 | - | gene_8127 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.32 | 102,986.10 Da | 35.61 | 97.79 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 604 | 887 | 5.83689E-91 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 38 | 71 | 6.9E-5 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 227 | 279 | 6.4E-8 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 600 | 884 | 5.4E-44 | IPR000719 |
| SUPERFAMILY | SSF52058 | L domain-like | 53 | 332 | 3.4E-65 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 582 | 888 | 7.69E-72 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 266 | 502 | 2.95E-42 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 582 | 677 | 1.8E-19 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 210 | 536 | 4.0E-80 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 37 | 209 | 1.1E-44 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 678 | 910 | 1.5E-59 | - |
| SMART | SM00369 | LRR_typ_2 | 169 | 192 | 130.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 242 | 265 | 25.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 598 | 886 | 1.1E-22 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 193 | 218 | 31.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 97 | 121 | 200.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 266 | 290 | 130.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 456 | 480 | 130.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 598 | 894 | 35.19862 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 737 | 749 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25930.1 | Protein kinase family protein with leucine-rich repeat domain. | 0 |
| RefSeq | XP_010669046.2 | receptor-like protein kinase HSL1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SGP2 | Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana OX=3702 GN=HSL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LBI7 | Protein kinase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology