Basic Information
Locus ID:
gene_8122
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Leucine Rich Repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_12_Chr_6 | 35236923 | 35239319 | - | gene_8122 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.02 | 78,182.56 Da | 43.18 | 95.55 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 66 | 125 | 3.0E-7 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 377 | 660 | 7.3E-43 | IPR000719 |
| Pfam | PF12799 | Leucine Rich repeats (2 copies) | 18 | 57 | 1.1E-6 | IPR025875 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 375 | 668 | 1.75E-69 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 3 | 281 | 4.16E-49 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 130 | 314 | 2.5E-38 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1 | 129 | 9.3E-37 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 455 | 683 | 3.0E-60 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 359 | 454 | 2.1E-17 | - |
| SMART | SM00220 | serkin_6 | 375 | 662 | 5.0E-21 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 375 | 670 | 34.534321 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 513 | 525 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25930.1 | Protein kinase family protein with leucine-rich repeat domain. | 0 |
| RefSeq | XP_010669046.2 | receptor-like protein kinase HSL1 [Beta vulgaris subsp. vulgaris] | 0 |
| P47735 | Receptor-like protein kinase 5 OS=Arabidopsis thaliana OX=3702 GN=RLK5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LBI7 | Protein kinase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology