Basic Information
Locus ID:
gene_8081
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_12_Chr_6 | 34280179 | 34285352 | - | gene_8081 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 53,945.11 Da | 42.59 | 91.31 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17939 | DEADc_EIF4A | 107 | 304 | 3.07872E-133 | - |
| CDD | cd18787 | SF2_C_DEAD | 315 | 445 | 1.33334E-59 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 328 | 436 | 1.6E-28 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 127 | 288 | 3.4E-41 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 171 | 456 | 4.46E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 311 | 475 | 3.8E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 92 | 310 | 8.7E-68 | IPR027417 |
| SMART | SM00490 | helicmild6 | 355 | 436 | 3.1E-31 | IPR001650 |
| SMART | SM00487 | ultradead3 | 121 | 318 | 2.2E-57 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 133 | 303 | 29.937149 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 102 | 130 | 10.513013 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 314 | 475 | 25.566635 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 249 | 257 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.1 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_021856606.1 | eukaryotic initiation factor 4A-9 [Spinacia oleracea] | 0 |
| Q40471 | Eukaryotic initiation factor 4A-9 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A249Y6Z7 | Eukaryotic initiation factor 4A OS=Hylocereus polyrhizus OX=1195597 GN=IF4A1 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology