Basic Information
Locus ID:
gene_8019
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_12_Chr_6 | 32688097 | 32720969 | - | gene_8019 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 184,584.08 Da | 43.64 | 88.02 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 1580 | 1642 | 8.2804E-17 | IPR002048 |
| CDD | cd05121 | ABC1_ADCK3-like | 614 | 868 | 4.9668E-91 | - |
| Pfam | PF13499 | EF-hand domain pair | 1578 | 1642 | 3.9E-9 | IPR002048 |
| Pfam | PF03109 | ABC1 family | 633 | 738 | 3.7E-29 | IPR004147 |
| Pfam | PF00646 | F-box domain | 73 | 106 | 9.4E-5 | IPR001810 |
| Pfam | PF00144 | Beta-lactamase | 1007 | 1277 | 1.3E-43 | IPR001466 |
| Pfam | PF07734 | F-box associated | 285 | 408 | 2.6E-8 | IPR006527 |
| SUPERFAMILY | SSF81383 | F-box domain | 69 | 117 | 2.49E-11 | IPR036047 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 616 | 838 | 2.24E-20 | IPR011009 |
| SUPERFAMILY | SSF56601 | beta-lactamase/transpeptidase-like | 1003 | 1281 | 2.69E-51 | IPR012338 |
| SUPERFAMILY | SSF47473 | EF-hand | 1512 | 1642 | 1.93E-18 | IPR011992 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 167 | 400 | 1.96E-7 | IPR011043 |
| Gene3D | G3DSA:1.10.238.10 | - | 1502 | 1644 | 5.6E-19 | - |
| Gene3D | G3DSA:3.40.710.10 | - | 1003 | 1287 | 3.0E-74 | IPR012338 |
| Gene3D | G3DSA:1.20.1280.50 | - | 66 | 108 | 1.4E-6 | - |
| Gene3D | G3DSA:3.40.710.10 | - | 1366 | 1469 | 6.3E-6 | IPR012338 |
| Gene3D | G3DSA:2.120.10.80 | - | 164 | 417 | 2.5E-5 | IPR015915 |
| SMART | SM00054 | efh_1 | 1617 | 1644 | 1.7 | IPR002048 |
| SMART | SM00054 | efh_1 | 1579 | 1607 | 5.4E-4 | IPR002048 |
| SMART | SM00256 | fbox_2 | 69 | 109 | 5.2E-7 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 165 | 398 | 5.4E-27 | IPR017451 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 1575 | 1610 | 14.987627 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 1613 | 1644 | 9.854874 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 1588 | 1600 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1299 | 1313 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1294 | 1314 | - | - |
| Coils | Coil | Coil | 1554 | 1582 | - | - |
| Coils | Coil | Coil | 907 | 927 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G24810.1 | ABC1 family protein. | 0 |
| RefSeq | XP_021843979.1 | uncharacterized protein LOC110783904 [Spinacia oleracea] | 0 |
| Q93Y08 | Protein ACTIVITY OF BC1 COMPLEX KINASE 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ABC1K8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9ECP2 | ABC1 domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg36880 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8019 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah034341 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g035090 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg20611, Sbi_jg23195 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16996 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009156 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl53058, Sgl58333 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000017592, gene:ENSEOMG00000019025 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0013150, CQ.Regalona.r1.2BG0015080 |
| Anacardiaceae | Pistacia vera | 17 | pistato.v30082830, pistato.v30082850, pistato.v30082860 ... |
| Apiaceae | Apium graveolens | 1 | Ag7G00217 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G019490 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103713116 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.615.V1.1, AsparagusV1_05.2351.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri14G31407, Ftri16G33640, Ftri7G24755, Ftri7G28562 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G24810.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003586m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g22640.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g077540.2N, BniB04g003660.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G2140 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g09280 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g24210 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-353 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1623 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00030344, Pov_00030890 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb2G12626, Lb2G12627, Lb2G12628, Lb2G12631 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.2867, BH06.2665, CH06.2979 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0549860, gene-QOZ80_6BG0503430 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0431720.1, HORVU.MOREX.r3.7HG0727480.2 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_035762 |
| Poaceae | Oryza coarctata | 1 | Oco12G016720 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g48770.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G254100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0401089, Pt_Chr0401092 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G021470, Chr11G001100 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G703500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG058370, gene_TRIDC7BG051030 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G419200.1, TraesCS7B02G319800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb272880_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-9629 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g31086 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.184, evm.TU.LG15.58 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g20680 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.990 |
| Rhizophoraceae | Carallia pectinifolia | 5 | nbisL1-mrna-13495, nbisL1-mrna-16620, nbisL1-mrna-16621 ... |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10852, nbisL1-mrna-5482 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-17183, nbisL1-mrna-9226 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000004l.260, evm.TU.utg000025l.71 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00004008, Maker00012195 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-23179, nbisL1-mrna-3682 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11068, nbisL1-mrna-7710 |
| Salicaceae | Populus euphratica | 3 | populus_peu04562, populus_peu04564, populus_peu13092 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635578 |
| Solanaceae | Solanum chilense | 1 | SOLCI004786700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028632 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13304 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G1850 |
| Zosteraceae | Zostera marina | 1 | Zosma03g19080.v3.1 |