Basic Information
Locus ID:
gene_8013
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_12_Chr_6 | 32531839 | 32536568 | - | gene_8013 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.14 | 73,097.12 Da | 58.73 | 75.06 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 342 | 602 | 7.3097E-89 | - |
| Pfam | PF00069 | Protein kinase domain | 337 | 587 | 3.2E-40 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 318 | 595 | 2.29E-69 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 305 | 408 | 3.8E-25 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 409 | 612 | 1.2E-47 | - |
| SMART | SM00220 | serkin_6 | 336 | 596 | 4.3E-27 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 336 | 599 | 35.650906 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 454 | 466 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 638 | 658 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 644 | 658 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 87 | - | - |
| Coils | Coil | Coil | 262 | 291 | - | - |
| Coils | Coil | Coil | 202 | 248 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24370.1 | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain. | 0 |
| RefSeq | XP_021744193.1 | U-box domain-containing protein 52-like [Chenopodium quinoa] | 0 |
| Q9FKG6 | U-box domain-containing protein 52 OS=Arabidopsis thaliana OX=3702 GN=PUB52 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7J7NK52 | Thioredoxin domain-containing protein OS=Kingdonia uniflora OX=39325 GN=GIB67_043215 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology