Basic Information
Locus ID:
gene_7972
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 8750693 | 8763010 | - | gene_7972 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.77 | 203,041.47 Da | 48.94 | 86.15 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1472 | 1885 | 1.69465E-123 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1519 | 1890 | 6.4E-85 | IPR000569 |
| SUPERFAMILY | SSF48371 | ARM repeat | 185 | 654 | 6.37E-40 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1464 | 1883 | 3.92E-98 | IPR035983 |
| Gene3D | G3DSA:1.25.10.10 | - | 175 | 493 | 1.2E-50 | IPR011989 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1411 | 1651 | 8.9E-45 | - |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1762 | 1888 | 5.3E-33 | - |
| SMART | SM00119 | hect_3 | 1486 | 1890 | 8.3E-88 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1496 | 1890 | 57.683914 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1077 | 1092 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 965 | 1030 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1143 | 1172 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 965 | 1092 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 661 | 676 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 515 | 529 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 661 | 706 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1143 | 1170 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 692 | 706 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 515 | 534 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 65 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 127 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 115 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_021775478.1 | E3 ubiquitin-protein ligase UPL3-like [Chenopodium quinoa] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T1QGT3 | HECT domain-containing protein OS=Carya illinoinensis OX=32201 GN=CIPAW_05G081300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology