Basic Information
Locus ID:
gene_7937
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_12_Chr_6 | 30418594 | 30420808 | - | gene_7937 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.26 | 81,211.96 Da | 47.07 | 72.35 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09272 | RNase_HI_RT_Ty1 | 550 | 688 | 4.36023E-69 | - |
| Pfam | PF13976 | GAG-pre-integrase domain | 101 | 152 | 3.5E-11 | IPR025724 |
| Pfam | PF00665 | Integrase core domain | 165 | 266 | 2.9E-13 | IPR001584 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 166 | 338 | 8.35E-45 | IPR012337 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 518 | 657 | 7.56E-5 | IPR043502 |
| Gene3D | G3DSA:3.30.420.10 | - | 160 | 337 | 2.0E-43 | IPR036397 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 163 | 329 | 23.187431 | IPR001584 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 467 | 486 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 463 | 494 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 409 | 434 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 410 | 428 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23160.2 | - | 0 |
| RefSeq | XP_031377996.1 | uncharacterized protein LOC116193313 [Punica granatum] | 0 |
| Q9ZT94 | Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1 | 0 | |
| TrEMBL | A0A2N9EEF3 | CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS1024 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7937 |
| Amaranthaceae | Suaeda glauca | 21 | Sgl01711, Sgl02695, Sgl06865, Sgl07852, Sgl10642, Sgl12296 ... |
| Arecaceae | Cocos nucifera | 1 | COCNU_10G004270 |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G04102, Ftri5G14832 |
| Brassicaceae | Brassica nigra | 6 | BniB02g026020.2N, BniB03g050210.2N, BniB05g050630.2N ... |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G03974 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_013442, gene-QYE76_055164, gene-QYE76_056584 ... |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10413 |
| Zosteraceae | Zostera marina | 1 | Zosma06g16920.v3.1 |