Basic Information
Locus ID:
gene_7682
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Organic cation carnitine transporter
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_12_Chr_6 | 17658043 | 17665225 | - | gene_7682 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.96 | 57,383.05 Da | 37.68 | 108.28 | 0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07690 | Major Facilitator Superfamily | 363 | 498 | 3.5E-10 | IPR011701 |
| Pfam | PF00083 | Sugar (and other) transporter | 75 | 248 | 9.1E-34 | IPR005828 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 33 | 502 | 4.84E-70 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 42 | 506 | 3.4E-87 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 50 | 498 | 41.408047 | IPR020846 |
| ProSitePatterns | PS00216 | Sugar transport proteins signature 1. | 374 | 389 | - | IPR005829 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13050.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_020539794.1 | organic cation/carnitine transporter 7 isoform X2 [Jatropha curcas] | 0 |
| Q940M4 | Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana OX=3702 GN=OCT7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A067JM06 | MFS domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_22561 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology