Basic Information
Locus ID:
gene_7516
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Short Name:
CMT1
Description:
DNA (cytosine-5)-methyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 108207889 | 108216543 | + | gene_7516 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 86,644.85 Da | 36.97 | 74.50 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 313 | 363 | 2.09006E-27 | - |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 309 | 362 | 5.1E-12 | IPR023780 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 374 | 734 | 9.7E-32 | IPR001525 |
| Pfam | PF01426 | BAH domain | 52 | 128 | 1.0E-10 | IPR001025 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 301 | 364 | 1.59E-14 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 196 | 734 | 1.23E-76 | IPR029063 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 533 | 700 | 2.1E-64 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 52 | 148 | 5.6E-28 | IPR043151 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 149 | 532 | 1.3E-164 | - |
| SMART | SM00439 | BAH_4 | 37 | 163 | 4.5E-8 | IPR001025 |
| SMART | SM00298 | chromo_7 | 308 | 367 | 6.3E-12 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 43 | 163 | 15.033242 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 309 | 362 | 13.842601 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 197 | 741 | 44.670288 | IPR001525 |
| ProSitePatterns | PS00095 | C-5 cytosine-specific DNA methylases C-terminal signature. | 716 | 734 | - | IPR031303 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 332 | 352 | - | IPR023779 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 468 | 481 | 7.5E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 198 | 214 | 7.5E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 422 | 436 | 7.5E-11 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 305 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 280 | 305 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80740.1 | chromomethylase 1. ecotype Kl-0 chromomethylase (CMT1). A plant line expressing an RNAi construct directed against DMT4 has reduced agrobacterium-mediated tumor formation. | 0 |
| RefSeq | XP_019421901.1 | PREDICTED: putative DNA (cytosine-5)-methyltransferase CMT1 isoform X2 [Lupinus angustifolius] | 0 |
| Q9AXT8 | DNA (cytosine-5)-methyltransferase 1 OS=Zea mays OX=4577 GN=MET2A PE=1 SV=1 | 0 | |
| TrEMBL | A0A4P1QTS7 | Cytosine-specific methyltransferase OS=Lupinus angustifolius OX=3871 GN=TanjilG_22073 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology