Basic Information
Locus ID:
gene_7442
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_12_Chr_6 | 7258471 | 7267210 | - | gene_7442 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.11 | 44,988.18 Da | 52.88 | 77.38 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02947 | TRX_family | 95 | 172 | 4.48206E-33 | - |
| CDD | cd16745 | RING-HC_AtRMA_like | 224 | 273 | 1.16321E-25 | - |
| Pfam | PF00085 | Thioredoxin | 90 | 172 | 3.6E-26 | IPR013766 |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 225 | 277 | 8.4E-9 | - |
| SUPERFAMILY | SSF52833 | Thioredoxin-like | 87 | 172 | 1.8E-32 | IPR036249 |
| SUPERFAMILY | SSF57850 | RING/U-box | 204 | 278 | 2.08E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 198 | 301 | 2.9E-17 | IPR013083 |
| Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 88 | 194 | 8.7E-31 | - |
| SMART | SM00184 | ring_2 | 226 | 271 | 8.2E-10 | IPR001841 |
| TIGRFAM | TIGR01068 | thioredoxin: thioredoxin | 92 | 173 | 1.7E-31 | IPR005746 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 226 | 272 | 12.681067 | IPR001841 |
| ProSiteProfiles | PS51352 | Thioredoxin domain profile. | 75 | 197 | 14.639602 | IPR013766 |
| ProSitePatterns | PS00194 | Thioredoxin family active site. | 108 | 126 | - | IPR017937 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 241 | 250 | - | IPR017907 |
| PRINTS | PR00421 | Thioredoxin family signature | 107 | 115 | 3.7E-8 | - |
| PRINTS | PR00421 | Thioredoxin family signature | 155 | 166 | 3.7E-8 | - |
| PRINTS | PR00421 | Thioredoxin family signature | 115 | 124 | 3.7E-8 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15360.1 | thioredoxin M-type 4. encodes a prokaryotic thioredoxin | 0 |
| RefSeq | XP_010695001.2 | E3 ubiquitin-protein ligase RMA3 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SEU6 | Thioredoxin M4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g15360 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5J5ABL2 | RING-type E3 ubiquitin transferase OS=Nyssa sinensis OX=561372 GN=F0562_008934 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology