Basic Information
Locus ID:
gene_7420
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
recombinational repair
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 90660610 | 90688792 | + | gene_7420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.90 | 117,751.25 Da | 50.02 | 77.71 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 262 | 601 | 4.69117E-83 | - |
| CDD | cd18793 | SF2_C_SNF | 906 | 1015 | 3.70326E-53 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 907 | 1006 | 9.2E-16 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 283 | 677 | 3.7E-64 | IPR000330 |
| SUPERFAMILY | SSF57850 | RING/U-box | 706 | 776 | 1.6E-10 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 251 | 601 | 1.04E-42 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 610 | 1063 | 9.26E-55 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 902 | 1063 | 5.3E-56 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 364 | 457 | 5.8E-11 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 683 | 779 | 3.4E-12 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 466 | 612 | 2.5E-29 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 237 | 323 | 8.3E-11 | IPR038718 |
| SMART | SM00487 | ultradead3 | 258 | 578 | 3.6E-25 | IPR014001 |
| SMART | SM00490 | helicmild6 | 923 | 1006 | 1.5E-18 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 383 | 563 | 10.414772 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 898 | 1059 | 14.099077 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 714 | 753 | 11.028731 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 729 | 738 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 199 | 219 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 101 | 172 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 449 | 477 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 449 | 486 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 55 | 172 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 876 | 903 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 55 | 93 | - | - |
| Coils | Coil | Coil | 1019 | 1039 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_028072872.1 | helicase-like transcription factor CHR28 isoform X1 [Camellia sinensis] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B7BEX3 | Helicase-like transcription factor CHR28 OS=Davidia involucrata OX=16924 GN=Din_036227 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology