Basic Information
Locus ID:
gene_7265
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 57489581 | 57524361 | + | gene_7265 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 135,198.44 Da | 43.56 | 78.76 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02659 | peptidase_C19C | 198 | 526 | 5.55986E-167 | - |
| CDD | cd00121 | MATH | 57 | 173 | 3.90702E-35 | IPR002083 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 887 | 1097 | 7.4E-58 | IPR029346 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 200 | 521 | 5.8E-47 | IPR001394 |
| Pfam | PF00917 | MATH domain | 63 | 181 | 1.5E-19 | IPR002083 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 625 | 877 | 1.3E-77 | IPR024729 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 53 | 189 | 4.74E-40 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 195 | 549 | 1.65E-97 | IPR038765 |
| Gene3D | G3DSA:3.10.20.90 | - | 685 | 802 | 2.1E-44 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 803 | 900 | 3.4E-27 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 197 | 525 | 8.2E-90 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 54 | 196 | 2.2E-51 | IPR008974 |
| SMART | SM00061 | math_3 | 57 | 161 | 7.5E-19 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 200 | 524 | 40.789928 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 55 | 180 | 38.673134 | IPR002083 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 201 | 216 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 440 | 457 | - | IPR018200 |
| Coils | Coil | Coil | 537 | 564 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.2 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_021715621.1 | ubiquitin carboxyl-terminal hydrolase 12-like isoform X1 [Chenopodium quinoa] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803LXJ5 | ubiquitinyl hydrolase 1 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology