Basic Information
Locus ID:
gene_7200
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
WD40-like Beta Propeller Repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_12_Chr_6 | 1957070 | 1961881 | - | gene_7200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.05 | 84,138.83 Da | 34.69 | 73.88 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07676 | WD40-like Beta Propeller Repeat | 632 | 644 | 0.22 | IPR011659 |
| Pfam | PF07676 | WD40-like Beta Propeller Repeat | 178 | 210 | 0.013 | IPR011659 |
| Pfam | PF07676 | WD40-like Beta Propeller Repeat | 411 | 423 | 0.054 | IPR011659 |
| Pfam | PF07676 | WD40-like Beta Propeller Repeat | 572 | 591 | 0.0012 | IPR011659 |
| Pfam | PF07676 | WD40-like Beta Propeller Repeat | 501 | 525 | 8.4E-4 | IPR011659 |
| SUPERFAMILY | SSF82171 | DPP6 N-terminal domain-like | 154 | 682 | 4.84E-27 | - |
| Gene3D | G3DSA:2.120.10.30 | - | 441 | 707 | 4.3E-22 | IPR011042 |
| Gene3D | G3DSA:2.120.10.30 | - | 138 | 345 | 6.4E-8 | IPR011042 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G01870.1 | tolB protein-related. | 0 |
| RefSeq | XP_030508726.1 | uncharacterized protein LOC115723393 [Cannabis sativa] | 0 |
| TrEMBL | A0A803Q3R6 | Protein TolB OS=Cannabis sativa OX=3483 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology