Basic Information
Locus ID:
gene_7183
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_12_Chr_6 | 1462282 | 1471830 | - | gene_7183 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.02 | 78,280.46 Da | 37.12 | 91.20 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 327 | 625 | 5.06865E-152 | - |
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 52 | 310 | 1.0096E-149 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 87 | 184 | 1.5E-5 | IPR030395 |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 332 | 621 | 5.6E-29 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 50 | 311 | 2.88E-37 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 326 | 625 | 1.44E-43 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 325 | 626 | 1.3E-46 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 50 | 201 | 1.3E-17 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 202 | 309 | 3.6E-11 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 327 | 626 | 38.779224 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 52 | 311 | 28.669703 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26690.1 | PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_021759066.1 | glycerophosphodiester phosphodiesterase GDPDL3-like [Chenopodium quinoa] | 0 |
| Q9SZ11 | Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3 | 0 | |
| TrEMBL | A0A0K9RMD6 | glycerophosphodiester phosphodiesterase OS=Spinacia oleracea OX=3562 GN=SOVF_050330 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology