Basic Information
Locus ID:
gene_7164
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
transcriptional corepressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 28937761 | 28968828 | + | gene_7164 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.58 | 74,010.79 Da | 52.97 | 67.14 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 394 | 671 | 9.73772E-59 | - |
| Pfam | PF08513 | LisH | 11 | 36 | 1.8E-6 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 638 | 671 | 0.011 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 554 | 589 | 0.05 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 431 | 464 | 5.9E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 395 | 422 | 0.0019 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 391 | 671 | 2.4E-58 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 376 | 527 | 1.7E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 528 | 671 | 2.5E-27 | IPR015943 |
| SMART | SM00320 | WD40_4 | 551 | 589 | 3.1E-6 | IPR001680 |
| SMART | SM00667 | Lish | 9 | 41 | 0.0016 | IPR006594 |
| SMART | SM00320 | WD40_4 | 425 | 464 | 2.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 384 | 422 | 1.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 512 | 548 | 13.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 633 | 671 | 1.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 592 | 631 | 0.93 | IPR001680 |
| SMART | SM00320 | WD40_4 | 468 | 509 | 0.61 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 640 | 671 | 10.508451 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 640 | 671 | 10.15287 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 432 | 464 | 13.582925 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 432 | 464 | 11.260138 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 558 | 598 | 8.904377 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 9 | 41 | 9.40982 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 397 | 431 | 10.107432 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 409 | 423 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 212 | 309 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 213 | 309 | - | - |
| Coils | Coil | Coil | 237 | 271 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_019106448.1 | transcriptional corepressor LEUNIG_HOMOLOG isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R1F4 | LisH domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_117780 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology