Basic Information
Locus ID:
gene_7140
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
fasciclin-like arabinogalactan protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_12_Chr_6 | 813745 | 820077 | - | gene_7140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 53,374.98 Da | 43.74 | 89.74 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 222 | 333 | 2.7E-14 | IPR000782 |
| Pfam | PF02469 | Fasciclin domain | 42 | 110 | 4.7E-5 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 37 | 178 | 2.22E-17 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 188 | 334 | 6.02E-19 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 30 | 178 | 1.7E-9 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 202 | 333 | 4.1E-12 | IPR036378 |
| SMART | SM00554 | fasc_3 | 230 | 334 | 1.2E-16 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 31 | 178 | 12.103788 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 192 | 331 | 13.343279 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 341 | 399 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55730.1 | FASCICLIN-like arabinogalactan 1. fasciclin-like arabinogalactan-protein 1 (Fla1) | 0 |
| RefSeq | XP_010675939.2 | fasciclin-like arabinogalactan protein 1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FM65 | Fasciclin-like arabinogalactan protein 1 OS=Arabidopsis thaliana OX=3702 GN=FLA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9B3R3 | Gamma-glutamyltransferase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology