Basic Information
Locus ID:
gene_7116
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_12_Chr_6 | 449779 | 453844 | - | gene_7116 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 119,868.67 Da | 34.74 | 102.63 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 491 | 516 | 0.35 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 780 | 1050 | 5.7E-39 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 39 | 81 | 2.5E-9 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 302 | 361 | 9.5E-8 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 758 | 1053 | 5.6E-64 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 330 | 676 | 8.63E-67 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 88 | 410 | 2.43E-61 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 616 | 701 | 4.4E-17 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 154 | 247 | 5.1E-23 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 40 | 153 | 1.4E-26 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 256 | 369 | 4.4E-33 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 739 | 850 | 9.9E-19 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 851 | 1070 | 2.9E-53 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 372 | 615 | 3.9E-78 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 635 | 657 | 280.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 610 | 634 | 170.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 492 | 516 | 74.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 777 | 1034 | 5.4E-29 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 348 | 372 | 130.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 562 | 586 | 87.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 300 | 324 | 41.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 155 | 179 | 65.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 658 | 682 | 230.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 444 | 468 | 160.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 777 | 1061 | 34.138569 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 637 | 659 | 7.319219 | IPR001611 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 783 | 806 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 896 | 908 | - | IPR008271 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 635 | 648 | 1.0E-4 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 327 | 340 | 1.0E-4 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1061 | 1088 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1073 | 1088 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G56040.2 | Leucine-rich receptor-like protein kinase family protein. | 0 |
| RefSeq | XP_010676102.2 | leucine-rich repeat receptor-like serine/threonine-protein kinase RGI4 [Beta vulgaris subsp. vulgaris] | 0 |
| F4K6B8 | Leucine-rich repeat receptor-like serine/threonine-protein kinase RGI4 OS=Arabidopsis thaliana OX=3702 GN=RGI4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8CKS4 | Protein kinase domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_4g090980 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg13026, jg20206, jg21635, jg25902 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_19496, gene_7116 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah000564, Ah009124 |
| Amaranthaceae | Beta vulgaris | 4 | BVRB_2g039770, BVRB_2g039860, BVRB_4g090980, BVRB_5g117660 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg18585, Sbi_jg30582, Sbi_jg37009, Sbi_jg58671 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg28538, Seu_jg4854 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00014901, GOSA_00017285 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl13760, Sgl18938, Sgl23613, Sgl28823, Sgl55193, Sgl60443 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000007808, gene:ENSEOMG00000023006 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.2BG0000320, CQ.Regalona.r1.4BG0026570 ... |
| Anacardiaceae | Pistacia vera | 8 | pistato.v30139620, pistato.v30151750, pistato.v30151770 ... |
| Apiaceae | Apium graveolens | 2 | Ag3G00504, Ag4G00265 |
| Arecaceae | Cocos nucifera | 2 | COCNU_05G010720, COCNU_11G006090 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103703785, gene-LOC103721265 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.2735.V1.1, AsparagusV1_01.525.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri16G00960, Ftri18G30640, Ftri2G19326 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G26540.1, AT5G56040.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10012511m.g.v1.0, Thhalv10024272m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g17860.v2.2, Sp7g24490.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g034820.2N, BniB05g010860.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G1528, Ceq04G1975 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G1693, Cgl04G2162 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g04500, gene.Cymno01g09700 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g17550 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG05.2080, evm.TU.LG10.700 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00022158, Pov_00037970 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G11850 |
| Poaceae | Echinochloa crus-galli | 12 | AH02.502, AH03.2321, AH05.1112, AH08.1917, BH02.520 ... |
| Poaceae | Eleusine coracana subsp. coracana | 8 | gene-QOZ80_1AG0011300, gene-QOZ80_1BG0059960 ... |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.1HG0026470.1, HORVU.MOREX.r3.3HG0233780.1 ... |
| Poaceae | Lolium multiflorum | 7 | gene-QYE76_006034, gene-QYE76_009826, gene-QYE76_009827 ... |
| Poaceae | Oryza coarctata | 6 | Oco02G002850, Oco09G003290, Oco10G003240, Oco15G011930 ... |
| Poaceae | Oryza sativa | 4 | LOC_Os01g07560.1, LOC_Os05g07740.1, LOC_Os08g38560.1 ... |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_02G217900, gene-BS78_03G049900, gene-BS78_K258100 ... |
| Poaceae | Puccinellia tenuiflora | 7 | Pt_Chr0200401, Pt_Chr0207400, Pt_Chr0403311, Pt_Chr0501686 ... |
| Poaceae | Sporobolus alterniflorus | 13 | Chr03G005030, Chr05G010600, Chr08G005480, Chr0G015180 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel1E01G211400, Tel3E01G162300, Tel5E01G406800 ... |
| Poaceae | Triticum dicoccoides | 9 | gene_TRIDC1AG014220, gene_TRIDC1BG019950 ... |
| Poaceae | Triticum aestivum | 12 | TraesCS1A02G113800.1, TraesCS1B02G134100.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb101560_P001, Zm00001eb199400_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-23539 |
| Poaceae | Zoysia macrostachya | 5 | Zma_g23183, Zma_g24297, Zma_g26515, Zma_g32747, Zma_g7679 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.2450, evm.TU.LG02.641, evm.TU.LG09.1803 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g08970, gene.Posoc03g20480 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_4_RagTag.454, evm.TU.Scaffold_7_RagTag.44 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-19712, nbisL1-mrna-28909 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-14009, nbisL1-mrna-7941 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-1875, nbisL1-mrna-22359 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000008l.103, evm.TU.utg000028l.22 |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00000018, Maker00001155, Maker00010567 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14615, nbisL1-mrna-7980 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1444, nbisL1-mrna-22567 |
| Salicaceae | Populus euphratica | 6 | populus_peu00052, populus_peu00053, populus_peu17054 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132617725, gene-LOC132632619 |
| Solanaceae | Solanum chilense | 2 | SOLCI000499000, SOLCI007106200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107014803, gene-LOC107026518 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.19992_chr07_+, gene_13070 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G2558, TC08G2477 |