Basic Information
Locus ID:
gene_7039
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Glutelin type-A
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 29730096 | 29732432 | + | gene_7039 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 38,961.13 Da | 41.16 | 92.55 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02242 | cupin_11S_legumin_N | 3 | 174 | 1.11595E-68 | - |
| CDD | cd02243 | cupin_11S_legumin_C | 199 | 354 | 1.99529E-81 | - |
| Pfam | PF00190 | Cupin | 197 | 338 | 1.2E-25 | IPR006045 |
| Pfam | PF00190 | Cupin | 15 | 152 | 4.0E-25 | IPR006045 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 16 | 347 | 8.11E-51 | IPR011051 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 9 | 179 | 7.8E-33 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 196 | 357 | 2.1E-53 | IPR014710 |
| SMART | SM00835 | Cupin_1_3 | 191 | 340 | 4.1E-21 | IPR006045 |
| SMART | SM00835 | Cupin_1_3 | 3 | 158 | 3.0E-31 | IPR006045 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 212 | 232 | 4.9E-16 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 277 | 292 | 4.9E-16 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 295 | 313 | 4.9E-16 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 259 | 275 | 4.9E-16 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 317 | 334 | 4.9E-16 | IPR006044 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G07750.1 | RmlC-like cupins superfamily protein. | 0 |
| RefSeq | XP_045826518.1 | glutelin type-D 1 [Trifolium pratense] | 0 |
| P07730 | Glutelin type-A 2 OS=Oryza sativa subsp. japonica OX=39947 GN=GLUA2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8YKM3 | 11S globulin OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology