Basic Information
Locus ID:
gene_7013
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 29299857 | 29305549 | + | gene_7013 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 72,685.89 Da | 40.04 | 92.29 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 270 | 312 | 1.12286E-28 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 393 | 432 | 5.5E-10 | IPR000225 |
| Pfam | PF04564 | U-box domain | 266 | 336 | 3.7E-23 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 476 | 514 | 1.4E-9 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 558 | 597 | 3.1E-4 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 256 | 342 | 1.74E-32 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 363 | 642 | 2.16E-51 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 266 | 340 | 8.5E-33 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 481 | 646 | 1.6E-30 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 363 | 480 | 5.7E-26 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 15 | 123 | 4.3E-9 | IPR036537 |
| SMART | SM00185 | arm_5 | 475 | 515 | 0.003 | IPR000225 |
| SMART | SM00185 | arm_5 | 393 | 433 | 2.4E-7 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 269 | 332 | 2.5E-36 | IPR003613 |
| SMART | SM00185 | arm_5 | 516 | 556 | 16.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 434 | 474 | 1.1 | IPR000225 |
| SMART | SM00185 | arm_5 | 557 | 597 | 37.0 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 265 | 339 | 46.892822 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 404 | 446 | 13.1774 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 486 | 528 | 8.5924 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 262 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 640 | 664 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 640 | 657 | - | - |
| Coils | Coil | Coil | 630 | 650 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_010685786.2 | U-box domain-containing protein 13 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SNC6 | U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KRZ9 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology