Basic Information
Locus ID:
gene_692
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Short Name:
UBP5
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_2_Chr_2 | 18464960 | 18488368 | - | gene_692 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 102,033.24 Da | 46.17 | 82.14 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 733 | 889 | 1.01611E-57 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 289 | 888 | 1.7E-85 | IPR001394 |
| Pfam | PF06337 | DUSP domain | 35 | 116 | 6.3E-18 | IPR006615 |
| SUPERFAMILY | SSF143791 | DUSP-like | 12 | 116 | 2.88E-23 | IPR035927 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 286 | 890 | 1.06E-105 | IPR038765 |
| Gene3D | G3DSA:3.10.20.90 | - | 129 | 214 | 2.1E-12 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 4 | 128 | 4.9E-30 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 273 | 523 | 3.4E-66 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 615 | 899 | 3.1E-54 | - |
| SMART | SM00695 | dusp | 31 | 118 | 2.7E-23 | IPR006615 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 12 | 115 | 16.246506 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 289 | 891 | 55.610321 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 290 | 305 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 833 | 850 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 257 | 282 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 633 | 656 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40930.1 | ubiquitin-specific protease 5. Encodes ubiquitin-specific protease with nuclear localization signals that is likely to be involved in ubiquitin-mediated protein degradation. | 0 |
| RefSeq | XP_010684133.1 | ubiquitin carboxyl-terminal hydrolase 5 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| O22207 | Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana OX=3702 GN=UBP5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A1L5JKB1 | Ubiquitin carboxyl-terminal hydrolase OS=Sesuvium portulacastrum OX=221166 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology