Basic Information
Locus ID:
gene_6897
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 27638561 | 27644825 | + | gene_6897 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 114,202.07 Da | 44.35 | 102.44 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 249 | 296 | 5.75584E-18 | - |
| Pfam | PF04564 | U-box domain | 248 | 320 | 2.6E-15 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 329 | 616 | 1.28E-16 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 238 | 320 | 1.5E-19 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 630 | 1015 | 5.21E-22 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 501 | 617 | 2.5E-8 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 246 | 320 | 4.8E-21 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 873 | 1023 | 2.8E-14 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 618 | 853 | 3.4E-10 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 321 | 470 | 2.0E-10 | IPR011989 |
| SMART | SM00185 | arm_5 | 978 | 1017 | 300.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 248 | 316 | 6.2E-20 | IPR003613 |
| SMART | SM00185 | arm_5 | 528 | 564 | 140.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 888 | 928 | 0.6 | IPR000225 |
| SMART | SM00185 | arm_5 | 565 | 608 | 350.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 356 | 400 | 190.0 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 244 | 323 | 17.958536 | IPR003613 |
| Coils | Coil | Coil | 477 | 497 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G20780.1 | senescence-associated E3 ubiquitin ligase 1. Encodes a protein containing a U-box and an ARM domain. | 0 |
| RefSeq | XP_021720659.1 | U-box domain-containing protein 44-like [Chenopodium quinoa] | 0 |
| Q9LM76 | U-box domain-containing protein 44 OS=Arabidopsis thaliana OX=3702 GN=PUB44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KRH3 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6897 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027823 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g171960 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg1554, Sbi_jg34993 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg3191, Seu_jg3192 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003380 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl72805, Sgl76344 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000035718, gene:ENSEOMG00000037562 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0004470, CQ.Regalona.r1.9BG0001160 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30061300, pistato.v30065060 |
| Apiaceae | Apium graveolens | 1 | Ag2G00822 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G003250, scaffold075410G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103718312 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.264.V1.1, AsparagusV1_Unassigned.156.V1.1 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1866 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1922 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.1080 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb0G37730, Lb3G18363, Lb3G19221 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.1057, evm.TU.LG24.1060 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g36720 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3639 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G1216 |