Basic Information
Locus ID:
gene_6873
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Elongation factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 27252778 | 27256315 | + | gene_6873 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.72 | 108,005.93 Da | 41.18 | 90.86 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16268 | EF2_II | 356 | 479 | 4.70262E-26 | - |
| CDD | cd04096 | eEF2_snRNP_like_C | 849 | 927 | 8.06081E-37 | - |
| CDD | cd01681 | aeEF2_snRNP_like_IV | 565 | 853 | 3.52992E-37 | - |
| CDD | cd16261 | EF2_snRNP_III | 494 | 565 | 3.16869E-30 | - |
| Pfam | PF00009 | Elongation factor Tu GTP binding domain | 46 | 306 | 2.0E-18 | IPR000795 |
| Pfam | PF00679 | Elongation factor G C-terminus | 846 | 930 | 4.0E-17 | IPR000640 |
| Pfam | PF00009 | Elongation factor Tu GTP binding domain | 11 | 37 | 9.0E-8 | IPR000795 |
| Pfam | PF03144 | Elongation factor Tu domain 2 | 398 | 476 | 1.0E-8 | IPR004161 |
| Pfam | PF14492 | Elongation Factor G, domain III | 494 | 560 | 1.6E-6 | IPR041095 |
| SUPERFAMILY | SSF54980 | EF-G C-terminal domain-like | 490 | 566 | 2.23E-17 | IPR035647 |
| SUPERFAMILY | SSF54980 | EF-G C-terminal domain-like | 849 | 947 | 2.01E-23 | IPR035647 |
| SUPERFAMILY | SSF54211 | Ribosomal protein S5 domain 2-like | 568 | 848 | 6.45E-21 | IPR020568 |
| SUPERFAMILY | SSF50447 | Translation proteins | 352 | 487 | 1.31E-23 | IPR009000 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 8 | 307 | 1.9E-53 | IPR027417 |
| Gene3D | G3DSA:3.30.230.10 | - | 590 | 843 | 2.5E-30 | IPR014721 |
| Gene3D | G3DSA:3.90.1430.10 | Yeast translation eEF2 (G' domain) | 183 | 292 | 2.0E-29 | - |
| Gene3D | G3DSA:3.30.70.240 | - | 845 | 980 | 1.4E-32 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 43 | 138 | 1.3E-13 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 7 | 42 | 2.9E-8 | IPR027417 |
| Gene3D | G3DSA:3.30.70.870 | Elongation Factor G (Translational Gtpase), domain 3 | 493 | 569 | 2.6E-25 | - |
| Gene3D | G3DSA:2.40.30.10 | Translation factors | 309 | 491 | 1.3E-38 | - |
| SMART | SM00838 | EFG_C_a | 846 | 935 | 1.5E-15 | IPR000640 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G22980.1 | Ribosomal protein S5/Elongation factor G/III/V family protein. | 0 |
| RefSeq | XP_010685478.1 | ribosome assembly protein 1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q7Z2Z2 | Elongation factor-like GTPase 1 OS=Homo sapiens OX=9606 GN=EFL1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A7C8ZSW5 | Tr-type G domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg32730 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6873 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027760 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g171440 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg1473, Sbi_jg35084 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg3269 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003439 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl72699, Sgl76238 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000036862, gene:ENSEOMG00000037722 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0005160, CQ.Regalona.r1.9BG0000670 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30073300 |
| Apiaceae | Apium graveolens | 1 | Ag6G02231 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G002380 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721162 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.1856.V1.1, AsparagusV1_07.3351.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G18170 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G22980.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10019976m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g20670.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g039360.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1674 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1668 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g00910 |
| Dunaliellaceae | Dunaliella salina | 3 | Dusal.0214s00012.v1.0, Dusal.0938s00001.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g36990 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-11225, nbisL1-mrna-11226 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.592 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00003864 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G23501 |
| Poaceae | Echinochloa crus-galli | 1 | CH07.1906 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2BG0188640, gene-QOZ80_3AG0223570 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0009760.1.CDS1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_020933, gene-QYE76_020989, gene-QYE76_059650 ... |
| Poaceae | Oryza coarctata | 3 | Oco03G012070, Oco05G019170, Oco06G020050 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g33850.1, LOC_Os03g44780.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G140900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0104563 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr01G009100, Chr04G025080, Chr12G028000 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G103000, Tel5E01G591300 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG006430, gene_TRIDC1BG008190 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G048300.1, TraesCS1B02G062700.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb052970_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-20520 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3162 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.1989, evm.TU.LG11.1559 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g00430 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.566 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-29570, nbisL1-mrna-29571, nbisL1-mrna-30505 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11237 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15951 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000015l.124 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015828 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-18380, nbisL1-mrna-18415 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-15227, nbisL1-mrna-22169 |
| Salicaceae | Populus euphratica | 2 | populus_peu36801, populus_peu36802 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132600672 |
| Solanaceae | Solanum chilense | 1 | SOLCI003294400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005113 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3344 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G1277 |
| Zosteraceae | Zostera marina | 1 | Zosma06g30510.v3.1 |