Basic Information
Locus ID:
gene_6869
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 121591273 | 121604658 | - | gene_6869 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.04 | 85,757.41 Da | 45.65 | 82.00 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00035 | Double-stranded RNA binding motif | 666 | 704 | 1.7E-4 | IPR014720 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 245 | 362 | 6.8E-5 | IPR004274 |
| SUPERFAMILY | SSF56784 | HAD-like | 127 | 357 | 7.42E-14 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 665 | 706 | 2.98E-9 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 128 | 384 | 1.2E-21 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 660 | 720 | 6.6E-7 | - |
| SMART | SM00577 | forpap2 | 207 | 369 | 6.1E-6 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 670 | 707 | 12.15959 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 134 | 385 | 12.087108 | IPR004274 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 554 | 606 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 569 | 584 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 586 | 601 | - | - |
| Coils | Coil | Coil | 155 | 175 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.1 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 0 |
| RefSeq | XP_010654171.1 | PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2 isoform X1 [Vitis vinifera] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 0 | |
| TrEMBL | D7TH87 | protein-serine/threonine phosphatase OS=Vitis vinifera OX=29760 GN=VIT_08s0007g02130 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology