Basic Information
Locus ID:
gene_6869
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 27156679 | 27166887 | + | gene_6869 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.27 | 99,796.25 Da | 46.85 | 79.79 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 712 | 887 | 2.23869E-67 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 291 | 886 | 7.6E-83 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 289 | 889 | 7.06E-110 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 275 | 515 | 7.1E-67 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 628 | 891 | 4.5E-58 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 291 | 889 | 57.85627 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 832 | 849 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 292 | 307 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22030.1 | ubiquitin-specific protease 8. | 0 |
| RefSeq | XP_021861826.1 | ubiquitin carboxyl-terminal hydrolase 8 [Spinacia oleracea] | 0 |
| Q9C585 | Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7C9E6S4 | Ubiquitin carboxyl-terminal hydrolase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology