Basic Information
Locus ID:
gene_6859
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 26990631 | 26992407 | + | gene_6859 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.95 | 47,023.71 Da | 36.08 | 107.90 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 11 | 54 | 8.79248E-18 | - |
| Pfam | PF04564 | U-box domain | 7 | 79 | 2.6E-18 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 107 | 387 | 1.84E-7 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 4 | 85 | 5.53E-27 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 4 | 78 | 6.9E-28 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 79 | 400 | 3.8E-8 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 10 | 75 | 5.0E-28 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 6 | 82 | 30.457512 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11840.1 | plant U-box 24. Encodes a U-box-domain-containing E3 ubiquitin ligase that acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_010685444.2 | E3 ubiquitin-protein ligase PUB24 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SF15 | E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis thaliana OX=3702 GN=PUB24 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9APV0 | RING-type E3 ubiquitin transferase OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology