halophFGD

Basic Information

Locus ID: gene_6837

Species & Taxonomic ID: Mesembryanthemum crystallinum & 3544

Genome Assembly: Koichi Toyokura Assembly

Description: Protein phosphatase 1 regulatory subunit

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Super-Scaffold_15_Chr_7S	26669480	26674690	+	gene_6837

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.07	88,028.03 Da	41.58	88.27	-0.49

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13855	Leucine rich repeat	176	235	1.9E-6	IPR001611
SUPERFAMILY	SSF81383	F-box domain	447	527	1.01E-10	IPR036047
SUPERFAMILY	SSF52058	L domain-like	16	242	1.05E-38	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	145	268	1.8E-22	IPR032675
Gene3D	G3DSA:1.20.1280.50	-	441	538	9.4E-7	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	2	144	2.9E-24	IPR032675
SMART	SM00365	LRR_sd22_2	84	105	39.0	-
SMART	SM00365	LRR_sd22_2	197	218	0.0065	-
SMART	SM00365	LRR_sd22_2	62	83	19.0	-
SMART	SM00365	LRR_sd22_2	40	61	15.0	-
SMART	SM00365	LRR_sd22_2	106	127	0.51	-
ProSiteProfiles	PS51450	Leucine-rich repeat profile.	64	85	7.788962	IPR001611
ProSiteProfiles	PS51450	Leucine-rich repeat profile.	108	129	9.205892	IPR001611
ProSiteProfiles	PS51450	Leucine-rich repeat profile.	42	63	7.711955	IPR001611
ProSiteProfiles	PS51450	Leucine-rich repeat profile.	199	220	8.944067	IPR001611
MobiDBLite	mobidb-lite	consensus disorder prediction	277	383	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K17550 (protein phosphatase 1 regulatory subunit 7)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G27310.1	F-box family protein.
RefSeq	XP_015872590.1	F-box protein At2g27310 [Ziziphus jujuba var. spinosa]
Swiss-Prot	Q9XIN8	F-box protein At2g27310 OS=Arabidopsis thaliana OX=3702 GN=At2g27310 PE=2 SV=1
TrEMBL	A0A6P3Z6P5	F-box protein At2g27310 OS=Ziziphus jujuba OX=326968 GN=LOC107409673 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg15114, jg16436, jg31939, jg3632, jg37619
Aizoaceae	Mesembryanthemum crystallinum	2	gene_14509, gene_6837
Amaranthaceae	Atriplex hortensis	1	Ah031258
Amaranthaceae	Beta vulgaris	1	BVRB_7g158710
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg2348, Sbi_jg34163
Amaranthaceae	Salicornia europaea	1	Seu_jg2424
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00006037
Amaranthaceae	Suaeda glauca	2	Sgl70888, Sgl74475
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000008593, gene:ENSEOMG00000037010 ... gene:ENSEOMG00000042678
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.7AG0021340, CQ.Regalona.r1.7BG0023570
Apiaceae	Apium graveolens	13	Ag10G01656, Ag10G01657, Ag10G01659, Ag10G01660, Ag10G01661 ... Ag11G03966, Ag11G04390, Ag2G01903, Ag2G01904, Ag2G01905, Ag3G00642, Ag8G01356, Ag8G01357
Arecaceae	Phoenix dactylifera	2	gene-LOC103703233, gene-LOC103714304
Asteraceae	Flaveria trinervia	8	Ftri12G29650, Ftri12G32528, Ftri18G04394, Ftri18G12149 ... Ftri18G33626, Ftri1G23857, Ftri1G28753, Ftri2G15975
Brassicaceae	Arabidopsis thaliana	3	AT2G27310.1, AT2G36090.1, AT3G44326.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10002035m.g.v1.0, Thhalv10016952m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp4g10120.v2.2, Sp4g18320.v2.2, Sp5g16910.v2.2
Brassicaceae	Brassica nigra	4	BniB01g008290.2N, BniB01g016460.2N, BniB06g008060.2N ... BniB08g032130.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq04G0713, Ceq05G1841
Casuarinaceae	Casuarina glauca	2	Cgl04G0810, Cgl05G1834
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno08g03510
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate02g18260
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-6005
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.1984, evm.TU.LG09.619
Plantaginaceae	Plantago ovata	3	Pov_00008561, Pov_00015770, Pov_00026611
Plumbaginaceae	Limonium bicolor	1	Lb1G06012
Poaceae	Echinochloa crus-galli	13	AH04.346, AH05.238, AH07.2069, AH09.934, BH01.2528, BH04.323 ... BH05.278, BH07.2029, BH09.1005, CH04.336, CH05.323, CH07.1870, CH09.1130
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_2AG0132990, gene-QOZ80_2BG0188380 ... gene-QOZ80_4AG0318370, gene-QOZ80_4BG0349770, gene-QOZ80_9AG0675120, gene-QOZ80_9BG0698950
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.2HG0166680.1.CDS1 ... HORVU.MOREX.r3.3HG0298180.1.CDS1, HORVU.MOREX.r3.4HG0351320.1.CDS1, HORVU.MOREX.r3.5HG0458550.1.CDS1, HORVU.MOREX.r3.5HG0526420.1.CDS1
Poaceae	Lolium multiflorum	4	gene-QYE76_002895, gene-QYE76_022752, gene-QYE76_043976 ... gene-QYE76_064915
Poaceae	Oryza coarctata	7	Oco01G015610, Oco04G012160, Oco07G005640, Oco08G005360 ... Oco21G001420, Oco22G002270, Oco24G001650
Poaceae	Oryza sativa	5	LOC_Os01g49154.1, LOC_Os02g33240.1, LOC_Os04g33820.1 ... LOC_Os11g05660.1, LOC_Os12g06030.1
Poaceae	Paspalum vaginatum	3	gene-BS78_04G153300, gene-BS78_06G086700 ... gene-BS78_08G029100
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0103853, Pt_Chr0604289, Pt_Chr0604324, Pt_Chr0703248
Poaceae	Sporobolus alterniflorus	12	Chr01G017310, Chr06G010480, Chr09G015060, Chr13G011020 ... Chr15G011980, Chr16G009670, Chr17G008700, Chr19G012240, Chr23G013520, Chr26G006140, Chr27G003710, Chr30G011260
Poaceae	Thinopyrum elongatum	7	Tel2E01G525000, Tel3E01G616100, Tel4E01G187000 ... Tel5E01G230400, Tel5E01G762900, Tel5E01G763000, Tel6E01G730500
Poaceae	Triticum dicoccoides	12	gene_TRIDC2AG042900, gene_TRIDC2BG045970 ... gene_TRIDC3AG055440, gene_TRIDC3BG061940, gene_TRIDC4AG031630, gene_TRIDC4BG018140, gene_TRIDC5AG021490, gene_TRIDC5AG068570, gene_TRIDC5AG068580, gene_TRIDC5BG022090, gene_TRIDC5BG073950, gene_TRIDC5BG073970
Poaceae	Triticum aestivum	16	TraesCS2A02G296200.1.cds1, TraesCS2D02G294100.1.cds1 ... TraesCS3A02G389000.1.cds1, TraesCS3B02G419600.1.cds1, TraesCS3D02G380500.1.cds1, TraesCS4A02G198200.1.cds1, TraesCS4B02G117200.1.cds1, TraesCS4D02G115000.1.cds1, TraesCS5A02G126800.1.cds1, TraesCS5A02G480700.1.cds1, TraesCS5A02G480800.1.cds1, TraesCS5B02G493600.1.cds1, TraesCS5B02G493700.1.cds1, TraesCS5D02G134400.1.cds1, TraesCS5D02G493900.1.cds1, TraesCS5D02G494100.1.cds1
Poaceae	Zea mays	5	Zm00001eb083710_P001, Zm00001eb197220_P001 ... Zm00001eb197260_P001, Zm00001eb242900_P001, Zm00001eb421990_P001
Poaceae	Zoysia japonica	8	nbis-gene-18877, nbis-gene-18878, nbis-gene-20810 ... nbis-gene-25620, nbis-gene-27076, nbis-gene-40198, nbis-gene-56660, nbis-gene-7723
Poaceae	Zoysia macrostachya	7	Zma_g13633, Zma_g16423, Zma_g17583, Zma_g18427, Zma_g19648 ... Zma_g21246, Zma_g24755
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g00760, gene.Posoc05g16210, gene.Posoc05g21710
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_12_RagTag.523, evm.TU.Scaffold_13_RagTag.517 ... evm.TU.Scaffold_1_RagTag.1382, evm.TU.Scaffold_2_RagTag.1019
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-24215, nbisL1-mrna-4176, nbisL1-mrna-6217
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-11497, nbisL1-mrna-14161, nbisL1-mrna-19512 ... nbisL1-mrna-4468
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-10123, nbisL1-mrna-15909, nbisL1-mrna-19904 ... nbisL1-mrna-4071
Rhizophoraceae	Kandelia candel	4	add.evm.TU.utg000009l.373, add.evm.TU.utg000015l.108 ... add.evm.TU.utg000016l.176, add.evm.TU.utg000027l.112
Rhizophoraceae	Kandelia obovata	1	Maker00015838
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-18398, nbisL1-mrna-19025, nbisL1-mrna-19804 ... nbisL1-mrna-21813
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-12001, nbisL1-mrna-13556, nbisL1-mrna-15271 ... nbisL1-mrna-5727
Salicaceae	Populus euphratica	3	populus_peu08478, populus_peu12468, populus_peu36869
Solanaceae	Lycium barbarum	2	gene-LOC132600616, gene-LOC132605439
Solanaceae	Solanum chilense	2	SOLCI005333400, SOLCI007463200
Solanaceae	Solanum pennellii	2	gene-LOC107001716, gene-LOC107004080
Tamaricaceae	Reaumuria soongarica	1	gene_7501
Tamaricaceae	Tamarix chinensis	2	TC03G1717, TC07G0750
Zosteraceae	Zostera marina	2	Zosma05g06680.v3.1, Zosma05g06690.v3.1