Basic Information
Locus ID:
gene_6802
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 116737595 | 116754428 | - | gene_6802 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.26 | 92,757.05 Da | 50.27 | 72.74 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16135 | Tify domain binding domain | 253 | 308 | 5.4E-10 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 435 | 485 | 1.6E-14 | IPR032308 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 673 | 809 | 4.46E-7 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 569 | 623 | 8.64E-6 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 484 | 555 | 7.2E-10 | IPR011011 |
| Gene3D | G3DSA:3.40.630.30 | - | 680 | 825 | 2.4E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 565 | 628 | 9.8E-10 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 484 | 552 | 3.7E-12 | IPR013083 |
| SMART | SM00249 | PHD_3 | 569 | 626 | 3.1E-4 | IPR001965 |
| SMART | SM00249 | PHD_3 | 491 | 542 | 5.7E-5 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 567 | 628 | 8.6178 | IPR019787 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 489 | 544 | 9.676899 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 492 | 541 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 130 | 151 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 124 | 151 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37520.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_034693825.1 | uncharacterized protein LOC117920421 isoform X2 [Vitis riparia] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9B102 | PHD-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology