Basic Information
Locus ID:
gene_6783
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Alkaline neutral invertase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 25892978 | 25905890 | + | gene_6783 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 122,876.60 Da | 37.58 | 85.27 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00850 | Histone deacetylase domain | 24 | 313 | 8.6E-84 | IPR023801 |
| Pfam | PF12899 | Alkaline and neutral invertase | 608 | 1049 | 1.5E-212 | IPR024746 |
| SUPERFAMILY | SSF48208 | Six-hairpin glycosidases | 608 | 1042 | 1.16E-46 | IPR008928 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 6 | 370 | 5.76E-121 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 1 | 382 | 1.2E-139 | IPR037138 |
| Gene3D | G3DSA:1.50.10.10 | - | 653 | 1044 | 3.0E-11 | IPR012341 |
| PRINTS | PR01271 | Histone deacetylase signature | 59 | 77 | 1.9E-54 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 111 | 131 | 1.9E-54 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 133 | 156 | 5.8E-22 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 229 | 247 | 1.9E-54 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 165 | 180 | 5.8E-22 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 90 | 107 | 1.9E-54 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 152 | 168 | 1.9E-54 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 212 | 225 | 1.9E-54 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 251 | 261 | 5.8E-22 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 26 | 43 | 1.9E-54 | IPR003084 |
| Coils | Coil | Coil | 587 | 607 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22510.1 | alkaline/neutral invertase. Encodes a chloroplast-targeted alkaline/neutral invertase that is implicated in the development of the photosynthetic apparatus and nitrogen assimilation in seedlings to control the sucrose to hexose ratio. | 0 |
| RefSeq | XP_010686069.2 | neutral/alkaline invertase 3, chloroplastic [Beta vulgaris subsp. vulgaris] | 0 |
| Q6H6N5 | Neutral/alkaline invertase 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=NIN3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A4S8IQ18 | histone deacetylase OS=Musa balbisiana OX=52838 GN=C4D60_Mb06t17670 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology