Basic Information
Locus ID:
gene_6766
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Belongs to the disease resistance NB-LRR family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 25539499 | 25550444 | + | gene_6766 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.23 | 125,754.21 Da | 38.67 | 100.94 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00931 | NB-ARC domain | 173 | 418 | 6.6E-30 | IPR002182 |
| SUPERFAMILY | SSF52047 | RNI-like | 554 | 1048 | 1.8E-27 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 157 | 430 | 7.63E-33 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 146 | 328 | 5.3E-23 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 414 | 511 | 5.6E-5 | IPR036388 |
| Gene3D | G3DSA:1.10.8.430 | - | 335 | 413 | 1.2E-7 | IPR042197 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 550 | 1066 | 1.2E-35 | IPR032675 |
| PRINTS | PR00364 | Disease resistance protein signature | 273 | 287 | 3.6E-19 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 365 | 379 | 3.6E-19 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 188 | 203 | 3.6E-19 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 648 | 664 | 3.6E-19 | - |
| Coils | Coil | Coil | 32 | 66 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G63350.4 | - | 0 |
| RefSeq | XP_021716646.1 | probable disease resistance protein At4g27220 [Chenopodium quinoa] | 0 |
| Q9C8T9 | Putative disease resistance protein At1g63350 OS=Arabidopsis thaliana OX=3702 GN=At1g63350 PE=3 SV=1 | 0 | |
| TrEMBL | V4TL30 | NB-ARC domain-containing protein (Fragment) OS=Citrus clementina OX=85681 GN=CICLE_v10017820mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology