Basic Information
Locus ID:
gene_6755
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 25390213 | 25395364 | + | gene_6755 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.26 | 44,827.80 Da | 43.37 | 93.93 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 234 | 364 | 2.3382E-60 | - |
| CDD | cd17939 | DEADc_EIF4A | 26 | 223 | 5.957E-134 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 247 | 355 | 9.5E-29 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 46 | 207 | 4.6E-40 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 90 | 375 | 3.22E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 10 | 229 | 3.4E-67 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 230 | 394 | 1.1E-58 | IPR027417 |
| SMART | SM00487 | ultradead3 | 40 | 237 | 2.1E-57 | IPR014001 |
| SMART | SM00490 | helicmild6 | 274 | 355 | 4.3E-31 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 21 | 49 | 10.321118 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 233 | 394 | 25.586552 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 52 | 222 | 29.59763 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 168 | 176 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.3 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_028058558.1 | eukaryotic initiation factor 4A-10-like [Camellia sinensis] | 0 |
| P41382 | Eukaryotic initiation factor 4A-10 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C8ZH22 | RNA helicase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology