Basic Information
Locus ID:
gene_6753
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 25379243 | 25383770 | + | gene_6753 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.96 | 85,853.75 Da | 47.26 | 78.95 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 514 | 774 | 2.47926E-85 | - |
| CDD | cd01989 | STK_N | 13 | 154 | 2.28137E-43 | - |
| Pfam | PF00069 | Protein kinase domain | 511 | 763 | 2.5E-42 | IPR000719 |
| Pfam | PF00582 | Universal stress protein family | 11 | 129 | 1.0E-8 | IPR006016 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 11 | 132 | 1.42E-10 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 486 | 767 | 3.24E-67 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 581 | 779 | 5.7E-47 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 485 | 580 | 1.5E-25 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 3 | 136 | 1.3E-9 | IPR014729 |
| SMART | SM00220 | serkin_6 | 508 | 778 | 3.5E-28 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 508 | 771 | 34.435383 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 626 | 638 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 292 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 336 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 293 | 312 | - | - |
| Coils | Coil | Coil | 383 | 438 | - | - |
| Coils | Coil | Coil | 459 | 479 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G12000.1 | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain. | 0 |
| RefSeq | XP_021864886.1 | U-box domain-containing protein 35-like isoform X2 [Spinacia oleracea] | 0 |
| Q9FKG6 | U-box domain-containing protein 52 OS=Arabidopsis thaliana OX=3702 GN=PUB52 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5B7BVE7 | Putative U-box domain-containing protein 52 isoform X1 OS=Davidia involucrata OX=16924 GN=Din_042290 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology