Basic Information
Locus ID:
gene_6740
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 25099980 | 25115502 | + | gene_6740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.94 | 51,594.05 Da | 53.97 | 87.22 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14008 | STKc_LKB1_CaMKK | 138 | 393 | 2.24037E-129 | - |
| Pfam | PF00069 | Protein kinase domain | 132 | 393 | 9.4E-57 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 126 | 400 | 1.09E-73 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 121 | 424 | 1.8E-78 | - |
| SMART | SM00220 | serkin_6 | 132 | 393 | 2.2E-72 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 132 | 393 | 41.770931 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 259 | 271 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 138 | 161 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 70 | 86 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 86 | - | - |
| Coils | Coil | Coil | 39 | 67 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60550.1 | geminivirus rep interacting kinase 2. Encodes a geminivirus Rep interacting kinase (GRIK; GRIK1/AT3G45240, GRIK2/AT5G60550). GRIKs are SnRK1 (SNF1-related kinases) activating kinases. Both GRIKs specifically bind to the SnRK1 catalytic subunit and phosphorylate the equivalent threonine residue in its activation loop in vitro. | 0 |
| RefSeq | XP_021716515.1 | serine/threonine-protein kinase GRIK2-like [Chenopodium quinoa] | 0 |
| Q5HZ38 | Serine/threonine-protein kinase GRIK2 OS=Arabidopsis thaliana OX=3702 GN=GRIK2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8YKL2 | Protein kinase domain-containing protein OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg16577, jg8266 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6740 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah028799, Ah036762 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g170080 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg27095, Sbi_jg33447 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8129 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006274 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73484, Sgl77004 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004832, gene:ENSEOMG00000039073 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0006160, CQ.Regalona.r1.9BG0006060 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30054290, pistato.v30058760 |
| Apiaceae | Apium graveolens | 2 | Ag10G00592, AgUnG00438 |
| Arecaceae | Cocos nucifera | 3 | COCNU_05G009010, COCNU_09G010110, scaffold059514G000010 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103696475, gene-LOC103713013, gene-LOC103719719 |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_01.838.V1.1, AsparagusV1_04.140.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri12G09559, Ftri2G00195 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G45240.1, AT5G60550.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10002549m.g.v1.0, Thhalv10013666m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp5g16060.v2.2, Sp6g22120.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g040300.2N, BniB05g040900.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1720 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl08G0373, Cgl08G1760 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g01120 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g24960 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-430 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.924 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014653 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G23830 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.1727, BH09.1904, CH09.2055 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0219130, gene-QOZ80_3BG0264460 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0095040.1, HORVU.MOREX.r3.4HG0337090.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_019802 |
| Poaceae | Oryza coarctata | 4 | Oco05G021590, Oco06G022400, Oco23G011490, Oco24G011310 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g50330.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G294300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0207142 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G007110, Chr12G030360, Chr19G017190, Chr24G000350 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G750200, Tel4E01G082200 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG065000, gene_TRIDC1BG074120 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G443100.1, TraesCS1B02G477300.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb075500_P001, Zm00001eb427480_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-26817, nbis-gene-35658 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g4816, Zma_g6091 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG12.1575, evm.TU.LG12.1773, evm.TU.LG19.56 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g10510 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_12_RagTag.355, evm.TU.Scaffold_13_RagTag.715 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-10293, nbisL1-mrna-24382, nbisL1-mrna-24420 ... |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-19754, nbisL1-mrna-20807 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16096, nbisL1-mrna-19628 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000015l.414, evm.TU.utg000027l.358 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00015883, Maker00017867 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-4334, nbisL1-mrna-5629 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11850 |
| Salicaceae | Populus euphratica | 4 | populus_peu04404, populus_peu08374, populus_peu35230 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132600431, gene-LOC132605962 |
| Solanaceae | Solanum chilense | 1 | SOLCI004152000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002861 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.23006_chr05_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G2748 |
| Zosteraceae | Zostera marina | 2 | Zosma01g10440.v3.1, Zosma03g06760.v3.1 |