Basic Information
Locus ID:
gene_6608
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 23089993 | 23096491 | + | gene_6608 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.03 | 82,591.81 Da | 47.93 | 82.74 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 16 | 163 | 4.37362E-53 | - |
| Pfam | PF00582 | Universal stress protein family | 17 | 139 | 5.3E-8 | IPR006016 |
| Pfam | PF00069 | Protein kinase domain | 433 | 684 | 1.5E-39 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 413 | 686 | 1.15E-68 | IPR011009 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 17 | 150 | 7.87E-11 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 401 | 503 | 6.6E-26 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 504 | 707 | 3.6E-48 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 16 | 161 | 2.8E-10 | IPR014729 |
| SMART | SM00220 | serkin_6 | 431 | 691 | 4.2E-26 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 431 | 709 | 34.732197 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 549 | 561 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 190 | 225 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 207 | 225 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 719 | 740 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 725 | 740 | - | - |
| Coils | Coil | Coil | 316 | 343 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G78940.3 | - | 0 |
| RefSeq | XP_021761816.1 | U-box domain-containing protein 52-like [Chenopodium quinoa] | 0 |
| Q9FKG5 | U-box domain-containing protein 51 OS=Arabidopsis thaliana OX=3702 GN=PUB51 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803M9X5 | Protein kinase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology