Basic Information
Locus ID:
gene_6603
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Organic cation carnitine transporter
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 23008322 | 23016754 | + | gene_6603 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.62 | 103,344.86 Da | 33.49 | 99.74 | 0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 77 | 114 | 4.5E-6 | IPR001810 |
| Pfam | PF00083 | Sugar (and other) transporter | 444 | 917 | 3.8E-40 | IPR005828 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 489 | 919 | 2.22E-62 | IPR036259 |
| SUPERFAMILY | SSF81383 | F-box domain | 75 | 131 | 2.22E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 72 | 126 | 2.8E-9 | - |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 439 | 923 | 5.0E-81 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 441 | 913 | 37.941345 | IPR020846 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 73 | 124 | 10.928167 | IPR001810 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13050.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_010696144.2 | organic cation/carnitine transporter 7 [Beta vulgaris subsp. vulgaris] | 0 |
| Q940M4 | Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana OX=3702 GN=OCT7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9AHW4 | MFS domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology