Basic Information
Locus ID:
gene_6552
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Autophagy-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 22124208 | 22133406 | + | gene_6552 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 56,724.62 Da | 42.57 | 89.05 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 230 | 514 | 1.62124E-63 | - |
| Pfam | PF08662 | Eukaryotic translation initiation factor eIF2A | 279 | 417 | 2.5E-4 | IPR013979 |
| Pfam | PF08614 | Autophagy protein 16 (ATG16) | 54 | 174 | 8.6E-16 | IPR013923 |
| Pfam | PF00400 | WD domain, G-beta repeat | 452 | 473 | 0.0067 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 228 | 259 | 0.011 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 219 | 514 | 8.42E-71 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 448 | 515 | 1.5E-13 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 68 | 355 | 1.9E-34 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 356 | 447 | 2.5E-19 | IPR015943 |
| SMART | SM00320 | WD40_4 | 304 | 344 | 2.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 430 | 473 | 0.13 | IPR001680 |
| SMART | SM00320 | WD40_4 | 262 | 301 | 0.0073 | IPR001680 |
| SMART | SM00320 | WD40_4 | 476 | 515 | 0.0054 | IPR001680 |
| SMART | SM00320 | WD40_4 | 388 | 427 | 0.037 | IPR001680 |
| SMART | SM00320 | WD40_4 | 220 | 259 | 1.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 347 | 385 | 4.2E-5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 311 | 348 | 9.651964 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 454 | 482 | 10.241105 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 395 | 430 | 8.536777 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 227 | 259 | 10.179234 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 311 | 353 | 12.546961 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 362 | 394 | 10.809215 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 227 | 268 | 13.382416 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 269 | 310 | 9.806668 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 331 | 345 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 372 | 386 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 246 | 260 | 2.9E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 331 | 345 | 2.9E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 372 | 386 | 2.9E-7 | IPR020472 |
| Coils | Coil | Coil | 85 | 161 | - | - |
| Coils | Coil | Coil | 57 | 77 | - | - |
| Coils | Coil | Coil | 170 | 190 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50230.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_010695982.1 | autophagy-related protein 16 isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q6NNP0 | Autophagy-related protein 16 OS=Arabidopsis thaliana OX=3702 GN=ATG16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9B004 | ATG16 domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg12997 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6552 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028491 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg26691, Sbi_jg33873, Sbi_jg33874 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15204 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011782 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl74002, Sgl77506 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004674, gene:ENSEOMG00000037015 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.7AG0008680, CQ.Regalona.r1.7AG0014240 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30140420 |
| Apiaceae | Apium graveolens | 2 | Ag5G00725, Ag6G00053 |
| Arecaceae | Cocos nucifera | 4 | COCNU_03G003810, scaffold002938G000060 ... |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120107146 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.910.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G19330 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G50230.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013321m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g12330.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g027290.2N, BniB02g027300.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1858 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G2026 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g12830 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0798s00005.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g23200 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1000 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00019685 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb5G26910, Lb5G26911 |
| Poaceae | Echinochloa crus-galli | 3 | BH01.759, CH01.755, Contig309.106 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0216440, gene-QOZ80_3BG0261760 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0510100.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_061913 |
| Poaceae | Oryza coarctata | 2 | Oco05G023410, Oco06G024300 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g53510.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G083300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0107128 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr07G027400, Chr12G037790 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G612500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG056260, gene_TRIDC5BG060300 |
| Poaceae | Triticum aestivum | 1 | TraesCS5D02G394200.1 |
| Poaceae | Zea mays | 1 | Zm00001eb057050_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-15041, nbis-gene-16127 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g2812, Zma_g493 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1128, evm.TU.LG12.598 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g01660 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.1102 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14783 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14249 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12651 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000010l.162 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009010 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-698 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8732 |
| Salicaceae | Populus euphratica | 1 | populus_peu28762 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632551 |
| Solanaceae | Solanum chilense | 1 | SOLCI004735100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015028 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_11176 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G2565 |
| Zosteraceae | Zostera marina | 1 | Zosma04g00830.v3.1 |