Basic Information
Locus ID:
gene_6546
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Short Name:
SOBIR1
Description:
Leucine-rich repeat receptor-like serine threonine tyrosine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 22031309 | 22037250 | + | gene_6546 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.04 | 78,918.95 Da | 43.48 | 92.23 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 161 | 220 | 1.6E-11 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 409 | 691 | 6.8E-43 | IPR000719 |
| SUPERFAMILY | SSF52058 | L domain-like | 136 | 274 | 3.57E-29 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 399 | 697 | 6.61E-72 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 413 | 499 | 3.2E-14 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 500 | 701 | 1.7E-56 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 102 | 315 | 1.8E-34 | IPR032675 |
| SMART | SM00220 | serkin_6 | 407 | 699 | 4.7E-37 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 407 | 703 | 38.70385 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 209 | 231 | 7.034293 | IPR001611 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 545 | 557 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 299 | 338 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 300 | 333 | - | - |
| Coils | Coil | Coil | 447 | 467 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G31880.1 | Leucine-rich repeat protein kinase family protein. Encodes a putative leucine rich repeat transmembrane protein that is expressed in response to Pseudomonas syringae. Expression of SRRLK may be required for silencing via lsiRNAs. Regulates cell death and innate immunity. | 0 |
| RefSeq | XP_010695988.1 | leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SKB2 | Leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR1 OS=Arabidopsis thaliana OX=3702 GN=SOBIR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RIB7 | Protein kinase domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_068580 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg13002, jg18811, jg25957, jg27538 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6546 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah028459, Ah034611 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26683, Sbi_jg33879 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15195 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011790 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73994, Sgl77499 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000038071, gene:ENSEOMG00000038884 |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.5BG0010460, CQ.Regalona.r1.7AG0008820 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30140350 |
| Arecaceae | Cocos nucifera | 8 | scaffold000478G000060, scaffold000478G000080 ... |
| Arecaceae | Phoenix dactylifera | 8 | gene-LOC103709938, gene-LOC103709979, gene-LOC103717007 ... |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_02.888.V1.1, AsparagusV1_09.1078.V1.1 ... |
| Asteraceae | Flaveria trinervia | 4 | Ftri10G08844, Ftri18G01571, Ftri1G34113, Ftri9G25433 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G31880.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016374m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g14230.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g012260.2N, BniB08g019940.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1861 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G2029 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g01740 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g02390 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11513 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.996 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00019678 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G26891 |
| Poaceae | Echinochloa crus-galli | 1 | CH07.1052 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0517720, gene-QOZ80_6BG0469670 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0672740.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_029528 |
| Poaceae | Oryza coarctata | 2 | Oco11G007570, Oco12G007560 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g18000.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_09G019000, gene-BS78_10G121900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Ctg00257 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr11G017670 |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G090400, Tel7E01G390700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG027320, gene_TRIDC7BG018040 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G215800.1.cds1, TraesCS7B02G122800.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb380860_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-45596, nbis-gene-54022, nbis-gene-59232 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g29515, Zma_g31762, Zma_g31763 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1124, evm.TU.LG12.603 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc05g07860, gene.Posoc05g07880 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.1098, evm.TU.Scaffold_4_RagTag.411 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14779, nbisL1-mrna-28964 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-19146, nbisL1-mrna-21160 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-12648, nbisL1-mrna-1913 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000008l.89, add.evm.TU.utg000010l.59 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000141, Maker00009060 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17030, nbisL1-mrna-22654 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1402, nbisL1-mrna-8730 |
| Salicaceae | Populus euphratica | 3 | populus_peu28759, populus_peu30181, populus_peu30182 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132601734, gene-LOC132632556 |
| Solanaceae | Solanum chilense | 2 | SOLCI002627000, SOLCI004735700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107015468, gene-LOC107021528 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.19928_chr07_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G2559 |
| Zosteraceae | Zostera marina | 1 | Zosma04g02530.v3.1 |