Basic Information
Locus ID:
gene_6478
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
LON peptidase N-terminal domain and RING finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 21036224 | 21039982 | + | gene_6478 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.81 | 46,171.11 Da | 53.13 | 70.48 | -0.80 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 367 | 404 | 3.40895E-10 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 365 | 408 | 3.3E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 366 | 411 | 1.3E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 331 | 415 | 7.1E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 367 | 404 | 7.7E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 367 | 405 | 10.822189 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 245 | 303 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 319 | 358 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 331 | 357 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 278 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 279 | 294 | - | - |
| Coils | Coil | Coil | 330 | 359 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25030.3 | - | 0 |
| RefSeq | XP_021720045.1 | uncharacterized protein LOC110687733 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A0K9R914 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_092810 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology