Basic Information
Locus ID:
gene_6473
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 20823667 | 20834690 | + | gene_6473 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.07 | 51,363.31 Da | 53.49 | 63.02 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 24 | 63 | 1.68857E-6 | - |
| CDD | cd16449 | RING-HC | 181 | 218 | 9.03528E-5 | - |
| CDD | cd02338 | ZZ_PCMF_like | 303 | 359 | 6.41818E-11 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 23 | 67 | 1.1E-6 | - |
| Pfam | PF00569 | Zinc finger, ZZ type | 300 | 342 | 3.3E-8 | IPR000433 |
| SUPERFAMILY | SSF57850 | RING/U-box | 176 | 222 | 7.27E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 17 | 75 | 1.09E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 291 | 359 | 2.47E-17 | - |
| Gene3D | G3DSA:3.30.60.90 | - | 294 | 359 | 1.0E-17 | IPR043145 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 169 | 270 | 1.8E-9 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 89 | 9.6E-14 | IPR013083 |
| SMART | SM00291 | zz_5 | 299 | 347 | 1.1E-5 | IPR000433 |
| SMART | SM00184 | ring_2 | 181 | 218 | 0.0041 | IPR001841 |
| SMART | SM00184 | ring_2 | 24 | 63 | 4.4E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 181 | 219 | 9.700961 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 24 | 64 | 11.309038 | IPR001841 |
| ProSiteProfiles | PS50135 | Zinc finger ZZ-type profile. | 299 | 338 | 10.553687 | IPR000433 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 196 | 205 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 421 | 464 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 421 | 440 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G24800.1 | proteolysis 1. Contains two ring finger domains and one ZZ domain. Week similarity to yeast Rad18p. Putative component of the N-end rule pathway (ubiquitin-dependent proteolysis). | 0 |
| RefSeq | XP_010684999.2 | E3 ubiquitin-protein ligase PRT1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8LBL5 | E3 ubiquitin-protein ligase PRT1 OS=Arabidopsis thaliana OX=3702 GN=PRT1 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9QF59 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_191270 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg11016, jg35507, jg40606 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6473 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028259 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g167510 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26536, Sbi_jg34030 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15065 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011929 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73823, Sgl77325 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005405, gene:ENSEOMG00000038572 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0010410, CQ.Regalona.r1.7BG0012490 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30241190 |
| Apiaceae | Apium graveolens | 1 | Ag2G01248 |
| Arecaceae | Cocos nucifera | 3 | COCNU_07G001030, COCNU_10G000740, COCNU_10G000750 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103703909, gene-LOC103716256 |
| Asparagaceae | Asparagus officinalis | 5 | AsparagusV1_01.788.V1.1, AsparagusV1_02.2248.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri11G12942, Ftri12G26752, Ftri9G11644 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G24800.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10002569m.g.v1.0, Thhalv10002593m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g22540.v2.2, SpUn0027_0020.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g035710.2N, BniB03g025850.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G2113 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g07290 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0681s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g00460 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-5393, nbisL1-mrna-9752 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG04.1550, evm.TU.LG04.1551, evm.TU.LG11.587 |
| Plantaginaceae | Plantago ovata | 4 | Pov_00004266, Pov_00015089, Pov_00015091, Pov_00033986 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G23998 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.2646, BH07.2466, CH07.2533 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_2AG0137800 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0595860.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_023722, gene-QYE76_023724 |
| Poaceae | Oryza coarctata | 2 | Oco03G015620, Oco04G016230 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g40810.1, LOC_Os09g33740.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_04G102800, gene-BS78_04G200700, gene-BS78_K026800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0204201 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr06G007340, Chr09G025690, Chr0G011110, Chr13G007290 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G435000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG034970, gene_TRIDC6BG041660 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G226100.1, TraesCS6B02G255500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb247460_P003 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-18509, nbis-gene-9459 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g13912, Zma_g16683 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.451, evm.TU.LG03.1018, evm.TU.LG04.306 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g16360 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.1370, evm.TU.Scaffold_5_RagTag.1203 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-11671, nbisL1-mrna-1696 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-16166, nbisL1-mrna-4328 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-11246, nbisL1-mrna-2617, nbisL1-mrna-842 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000006l.698, evm.TU.utg000011l.617 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00007668, Maker00013505 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9845 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-19901, nbisL1-mrna-4367 |
| Salicaceae | Populus euphratica | 3 | populus_peu04068, populus_peu30917, populus_peu34902 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132609069, gene-LOC132610301 |
| Solanaceae | Solanum chilense | 1 | SOLCI004417800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031755 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.301_chr01_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G0624, TC01G0626 |
| Zosteraceae | Zostera marina | 1 | Zosma04g25990.v3.1 |