Basic Information
Locus ID:
gene_6472
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
transcriptional corepressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 20806962 | 20822541 | + | gene_6472 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.66 | 82,769.70 Da | 52.24 | 66.48 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 480 | 756 | 2.17686E-57 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 516 | 550 | 5.1E-6 | IPR001680 |
| Pfam | PF08513 | LisH | 24 | 49 | 2.1E-6 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 722 | 756 | 0.03 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 638 | 673 | 0.018 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 482 | 508 | 0.087 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 479 | 756 | 2.93E-58 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 609 | 756 | 6.6E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 476 | 608 | 7.0E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 677 | 716 | 0.17 | IPR001680 |
| SMART | SM00320 | WD40_4 | 554 | 594 | 2.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 597 | 633 | 8.7 | IPR001680 |
| SMART | SM00667 | Lish | 22 | 54 | 0.0016 | IPR006594 |
| SMART | SM00320 | WD40_4 | 470 | 508 | 0.0015 | IPR001680 |
| SMART | SM00320 | WD40_4 | 636 | 674 | 2.9E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 511 | 550 | 1.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 718 | 756 | 7.1E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 643 | 683 | 8.637032 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 518 | 550 | 10.970139 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 725 | 756 | 10.040596 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 22 | 54 | 9.40982 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 518 | 550 | 13.215325 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 725 | 756 | 9.783781 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 303 | 389 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 301 | 389 | - | - |
| Coils | Coil | Coil | 93 | 124 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_019106448.1 | transcriptional corepressor LEUNIG_HOMOLOG isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R1F4 | LisH domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_117780 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology