Basic Information
Locus ID:
gene_6451
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
ATP-dependent DNA helicase Q-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 64622912 | 64644351 | - | gene_6451 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.02 | 132,405.95 Da | 50.64 | 78.07 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 428 | 630 | 7.8548E-104 | - |
| CDD | cd18794 | SF2_C_RecQ | 631 | 763 | 5.51629E-74 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 442 | 610 | 1.6E-19 | IPR011545 |
| Pfam | PF09382 | RQC domain | 853 | 969 | 4.1E-22 | IPR018982 |
| Pfam | PF00570 | HRDC domain | 1007 | 1075 | 9.2E-14 | IPR002121 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 647 | 753 | 1.5E-18 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 766 | 846 | 5.0E-14 | IPR032284 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 629 | 897 | 1.58E-59 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 1003 | 1084 | 3.49E-14 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 409 | 772 | 1.55E-41 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 850 | 972 | 1.1E-20 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 631 | 849 | 3.1E-63 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 999 | 1088 | 6.0E-23 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 404 | 630 | 7.4E-92 | IPR027417 |
| SMART | SM00956 | RQC_2 | 856 | 967 | 4.8E-22 | IPR018982 |
| SMART | SM00341 | hrdc7 | 1003 | 1085 | 9.8E-5 | IPR002121 |
| SMART | SM00487 | ultradead3 | 436 | 639 | 7.2E-31 | IPR014001 |
| SMART | SM00490 | helicmild6 | 673 | 754 | 2.2E-27 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 432 | 907 | 7.4E-167 | IPR004589 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 1003 | 1085 | 19.154705 | IPR002121 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 448 | 623 | 22.209934 | IPR014001 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 663 | 705 | 9.535332 | IPR001763 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 648 | 809 | 19.506706 | IPR001650 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 562 | 571 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1079 | 1099 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1165 | 1184 | - | - |
| Coils | Coil | Coil | 297 | 317 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_019079318.1 | PREDICTED: ATP-dependent DNA helicase Q-like 4A isoform X2 [Vitis vinifera] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A5B7ATW1 | DNA helicase OS=Davidia involucrata OX=16924 GN=Din_028302 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology