Basic Information
Locus ID:
gene_6435
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Short Name:
CDKD-1
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_15_Chr_7S | 19562804 | 19583483 | + | gene_6435 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.75 | 91,254.22 Da | 45.44 | 87.11 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01945 | ribokinase_group_B | 64 | 404 | 4.10783E-88 | - |
| CDD | cd07841 | STKc_CDK7 | 425 | 719 | 0.0 | IPR037770 |
| Pfam | PF00294 | pfkB family carbohydrate kinase | 70 | 294 | 2.8E-20 | IPR011611 |
| Pfam | PF00069 | Protein kinase domain | 428 | 706 | 1.2E-69 | IPR000719 |
| Pfam | PF00294 | pfkB family carbohydrate kinase | 350 | 404 | 6.6E-12 | IPR011611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 420 | 712 | 4.45E-93 | IPR011009 |
| SUPERFAMILY | SSF53613 | Ribokinase-like | 64 | 418 | 2.62E-52 | IPR029056 |
| Gene3D | G3DSA:3.40.1190.20 | - | 64 | 403 | 1.6E-59 | IPR029056 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 507 | 722 | 4.5E-66 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 416 | 506 | 4.2E-29 | - |
| SMART | SM00220 | serkin_6 | 426 | 706 | 2.1E-92 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 426 | 706 | 42.845112 | IPR000719 |
| ProSitePatterns | PS00584 | pfkB family of carbohydrate kinases signature 2. | 359 | 372 | - | IPR002173 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 544 | 556 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 432 | 456 | - | IPR017441 |
| PRINTS | PR00990 | Ribokinase signature | 94 | 113 | 1.6E-7 | IPR002139 |
| PRINTS | PR00990 | Ribokinase signature | 67 | 88 | 1.6E-7 | IPR002139 |
| PRINTS | PR00990 | Ribokinase signature | 276 | 287 | 1.6E-7 | IPR002139 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 778 | 795 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 762 | 776 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 728 | 813 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18040.1 | cyclin-dependent kinase D1;3. | 0 |
| RefSeq | XP_010678133.1 | cyclin-dependent kinase D-1 [Beta vulgaris subsp. vulgaris] | 0 |
| P29620 | Cyclin-dependent kinase D-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CDKD-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QLM9 | [RNA-polymerase]-subunit kinase OS=Spinacia oleracea OX=3562 GN=SOVF_165210 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg26997 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6435 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah016004 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g112070 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19512, Sbi_jg44072 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg17893 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00019288 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl53827, Sgl59092 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006791, gene:ENSEOMG00000022355 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0014920, CQ.Regalona.r1.5BG0016110 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30150480 |
| Apiaceae | Apium graveolens | 1 | Ag4G00637 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G016930 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712337 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1796.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G32878, Ftri9G01380 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G18040.1, AT1G66750.1, AT1G73690.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10007847m.g.v1.0, Thhalv10018665m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g16070.v2.2, Sp5g21710.v2.2, Sp5g28870.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB02g035090.2N, BniB03g007410.2N, BniB03g027880.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1420 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1579 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g05040, gene.Cymno05g05370 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0447s00007.v1.0, Dusal.0447s00008.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g22370 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1767 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00016089, Pov_00033231 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G29912 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.2595, BH05.2678, CH05.2768 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0374480, gene-QOZ80_5BG0421840 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0064460.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_013492, gene-QYE76_013493, gene-QYE76_013677 |
| Poaceae | Oryza coarctata | 2 | Oco09G008780, Oco10G008930 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g32600.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G133200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0505125 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G021210, Chr12G016720, Chr18G008390, Chr22G009250 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G405800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG036920, gene_TRIDC1BG041920 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G245600.1, TraesCS1B02G256600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb287310_P002, Zm00001eb350890_P003 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-14535, nbis-gene-23745 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g26801, Zma_g28182 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2256, evm.TU.LG14.1428 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g11270 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.60406.3, evm.TU.Scaffold_11_RagTag.635 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-14309, nbisL1-mrna-14310, nbisL1-mrna-22776 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4305 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12324 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000005l.5 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008813 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-952 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8384 |
| Salicaceae | Populus euphratica | 2 | populus_peu27747, populus_peu29742 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132634883 |
| Solanaceae | Solanum chilense | 1 | SOLCI002361100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026856 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_2332 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G1114 |
| Zosteraceae | Zostera marina | 1 | Zosma02g25660.v3.1 |